Factsheet for HORVU3Hr1G092610.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G092600.1	Barley	cytosol	100.0	100.0
TraesCS3A01G416900.1	Wheat	cytosol	98.61	98.61
TraesCS3D01G412400.2	Wheat	cytosol	98.43	98.26
TraesCS3B01G451900.1	Wheat	cytosol	98.08	98.08
EES04084	Sorghum	cytosol	85.71	85.12
GSMUA_Achr8P01340_001	Banana	cytosol	52.44	78.59
Zm00001d042416_P002	Maize	extracellular, plasma membrane	84.67	76.18
KRH03228	Soybean	nucleus	70.03	66.78
KRH57127	Soybean	endoplasmic reticulum, nucleus	70.56	66.18
AT5G63120.2	Thale cress	cytosol	67.25	65.31
Bra035857.1-P	Field mustard	cytosol	66.55	64.64
CDY16735	Canola	cytosol	66.55	64.64
CDY48128	Canola	cytosol	66.72	64.48
Solyc03g112350.2.1	Tomato	nucleus	71.6	63.13
HORVU3Hr1G018850.7	Barley	cytosol	55.23	57.95
PGSC0003DMT400046821	Potato	cytosol	69.69	55.71
VIT_17s0000g09130.t01	Wine grape	cytosol	59.23	55.65
HORVU1Hr1G083090.1	Barley	cytosol	17.77	40.64
HORVU5Hr1G037290.3	Barley	nucleus	36.24	39.25
HORVU3Hr1G031710.1	Barley	mitochondrion	16.2	35.63
HORVU3Hr1G024610.13	Barley	cytosol, plastid	43.38	35.22
HORVU4Hr1G031280.1	Barley	cytosol, plastid	32.4	30.95
HORVU7Hr1G084210.1	Barley	cytosol	31.88	30.0
HORVU5Hr1G048040.1	Barley	plastid	29.27	29.37
HORVU5Hr1G109340.2	Barley	plastid	33.45	29.0
HORVU1Hr1G091050.3	Barley	nucleus	28.92	27.76
HORVU4Hr1G053550.2	Barley	mitochondrion	37.46	27.08
HORVU3Hr1G022710.1	Barley	mitochondrion	29.62	26.65
HORVU6Hr1G080730.2	Barley	cytosol	14.63	25.69
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	16.9	25.53
HORVU4Hr1G007110.17	Barley	mitochondrion	30.66	22.86
HORVU2Hr1G025790.1	Barley	nucleus	36.59	20.61
HORVU0Hr1G020490.1	Barley	nucleus	37.46	20.17
HORVU3Hr1G018170.3	Barley	cytosol	44.25	18.38

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:HORVU3Hr1G092610
EnsemblPlants:HORVU3Hr1G092610.1	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:M0XA42	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002947F7B	SEG:seg	:

Description

Predicted protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:M0XA42]

Coordinates

chrchr3H:-:638699888..638703967

Molecular Weight (calculated)

62363.7 Da

IEP (calculated)

9.875

GRAVY (calculated)

-0.375

Length

574 amino acids

Sequence
(BLAST)

001: MNPYADNRYA DPSSYRDRRS DLAAAPILAP PVPVVAAQNP YAAPYTPMAA PVGGYGQGGG GYGGGMGYGG RGRGGGGGGP GGFRGGGGRG GSNGRDGLDS
101: LSLPKPDFRG LIPFEKSFYV ECPAVQAMSE TEVAQYRQLR DITVEGREVP KPIRFFHEAN FPDYCMQAIA KSGFVEPTPI QAQGWPMALK GRDVIGIAET
201: GSGKTLSYIL PGLVHVGAQP RLEQGDGPIV LILAPTRELA VQIQAEATKF GSYSRTRSTC IYGGAPKGPQ IRDLRRGVEI VIATPGRLID MLEAGHTNLR
301: RVTYLVLDEA DRMLDMGFEP QIRKILAQIR PDRQTLYWSA TWPREVETLA RQFLQNPYKV MIGTAELKAN HSIQQIVEVI SDHEKYPRLS KLLSDLMDGS
401: RILIFFQTKK ECDKVTRQLR MDGWPALSIH GDKAQSERDY VLAEFKNGKS PIMAATDVAA RGLDVKDIKC VINFDFPTTI EDYIHRIGRT GRAGATGMAF
501: TFFTHSNSKY SRNLVKILRE AGQVVNPALE AMSKSAGSMG GGSNFRSRGR GGFGGGGYGG NRSGSNSIPV RRRY

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.