Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 47.37 | 68.97 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 36.32 | 54.98 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 60.53 | 50.33 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 68.95 | 43.81 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 36.32 | 42.2 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 70.79 | 41.77 |
| CDX84672 | Canola | cytosol | 40.79 | 34.68 |
| OQU83862 | Sorghum | nucleus | 51.58 | 30.53 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 52.63 | 30.21 |
| CDY53786 | Canola | nucleus | 46.58 | 30.0 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 55.79 | 29.9 |
| KRH51212 | Soybean | nucleus | 54.74 | 29.67 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 41.05 | 29.6 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 55.26 | 29.49 |
| KRH01937 | Soybean | nucleus | 54.74 | 29.46 |
| PGSC0003DMT400043101 | Potato | nucleus | 54.47 | 29.28 |
| CDY37696 | Canola | nucleus | 45.26 | 29.15 |
| PGSC0003DMT400024330 | Potato | cytosol | 51.32 | 29.15 |
| Bra021872.1-P | Field mustard | nucleus | 50.26 | 28.98 |
| CDX79541 | Canola | nucleus | 47.37 | 28.62 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 57.63 | 28.44 |
| AT2G33730.1 | Thale cress | nucleus | 53.16 | 27.56 |
| Solyc02g081290.2.1 | Tomato | nucleus | 46.58 | 27.11 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 26.32 | 18.28 |
| HORVU3Hr1G092610.1 | Barley | cytosol | 25.53 | 16.9 |
| HORVU3Hr1G092600.1 | Barley | cytosol | 25.53 | 16.9 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 22.11 | 15.85 |
| HORVU7Hr1G084210.1 | Barley | cytosol | 25.0 | 15.57 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 24.21 | 15.31 |
| HORVU5Hr1G048040.1 | Barley | plastid | 22.11 | 14.69 |
| HORVU5Hr1G109340.2 | Barley | plastid | 24.47 | 14.05 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 22.37 | 13.32 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 23.42 | 12.59 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 25.0 | 11.96 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 23.42 | 8.73 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 23.95 | 8.54 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 23.68 | 6.51 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A287R0B7 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| EnsemblPlantsGene:HORVU5Hr1G044620 | EnsemblPlants:HORVU5Hr1G044620.1 | InterPro:Helicase_ATP-bd | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| ScanProsite:PS00039 | PFscan:PS51192 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF556 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 |
| SUPFAM:SSF52540 | UniParc:UPI000B45FE3D | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:345063893..345065721
Molecular Weight (calculated)
41598.6 Da
IEP (calculated)
7.406
GRAVY (calculated)
-0.434
Length
380 amino acids
Sequence
(BLAST)
(BLAST)
001: DFFHPSINQP VHGALLLYGR GFLADIDRRE QKKVAAAALQ KDYGAGAAAT YDALDMRVDR HWTDKRADEM TERDRRILRK DFGISYRGSR VPGPCRVGRR
101: AGSAPSCSGT STGPDTESPR RSRWPPCRSA SSGATSSASP KPAPARPPPS CSPCWPTSPA CRPPTSHSEA DEGPYALVLA PTRELAQQIE RETVKLVACL
201: GITVVSIVGG KVDSQSTIQK QASMLERGCE VIVATPGRLL DCLESRYAML NRCNYVVLDE ADRMIDMGFE PQVVGVLDEM PPSHLKPENA DEELDEARTY
301: RTTHMFSATM PPAMERLATK YLRNPVAVTV GFAGKAADLV AQNVVMVKVQ EKMPRLTRIL ADLDGHCVLQ HEELRGEADQ
101: AGSAPSCSGT STGPDTESPR RSRWPPCRSA SSGATSSASP KPAPARPPPS CSPCWPTSPA CRPPTSHSEA DEGPYALVLA PTRELAQQIE RETVKLVACL
201: GITVVSIVGG KVDSQSTIQK QASMLERGCE VIVATPGRLL DCLESRYAML NRCNYVVLDE ADRMIDMGFE PQVVGVLDEM PPSHLKPENA DEELDEARTY
301: RTTHMFSATM PPAMERLATK YLRNPVAVTV GFAGKAADLV AQNVVMVKVQ EKMPRLTRIL ADLDGHCVLQ HEELRGEADQ
001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.