Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G149500.1 | Wheat | nucleus | 73.11 | 90.3 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 87.44 | 87.61 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 72.33 | 69.14 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 68.5 | 66.54 |
| Zm00001d024533_P001 | Maize | nucleus | 68.99 | 66.01 |
| CDY72529 | Canola | cytosol | 37.98 | 62.12 |
| OQU79814 | Sorghum | nucleus | 59.08 | 60.99 |
| CDY44720 | Canola | nucleus | 45.53 | 53.7 |
| Bra029779.1-P | Field mustard | nucleus | 45.93 | 52.76 |
| CDY41597 | Canola | nucleus | 39.55 | 52.13 |
| KRH77709 | Soybean | nucleus | 55.94 | 51.63 |
| AT3G09620.2 | Thale cress | nucleus | 50.15 | 51.62 |
| KRH27757 | Soybean | nucleus | 55.74 | 51.31 |
| PGSC0003DMT400011665 | Potato | nucleus | 53.97 | 49.33 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 55.05 | 48.91 |
| GSMUA_Achr10P... | Banana | cytosol | 47.89 | 48.75 |
| CDY31513 | Canola | nucleus | 52.7 | 48.55 |
| Bra025856.1-P | Field mustard | nucleus | 55.35 | 48.16 |
| Solyc12g098700.1.1 | Tomato | nucleus | 54.17 | 48.13 |
| AT1G20920.3 | Thale cress | nucleus | 54.27 | 47.43 |
| HORVU3Hr1G092600.1 | Barley | cytosol | 20.61 | 36.59 |
| HORVU3Hr1G092610.1 | Barley | cytosol | 20.61 | 36.59 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 19.63 | 36.56 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 9.32 | 36.4 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 8.54 | 34.66 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 17.86 | 34.34 |
| HORVU4Hr1G053550.2 | Barley | mitochondrion | 25.71 | 33.0 |
| HORVU5Hr1G048040.1 | Barley | plastid | 17.57 | 31.29 |
| HORVU4Hr1G031280.1 | Barley | cytosol, plastid | 17.57 | 29.78 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 16.98 | 28.93 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 18.06 | 28.84 |
| HORVU7Hr1G084210.1 | Barley | cytosol | 17.08 | 28.52 |
| HORVU5Hr1G109340.2 | Barley | plastid | 18.45 | 28.4 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 8.93 | 27.83 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 18.45 | 26.59 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 19.33 | 25.58 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 8.73 | 23.42 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 19.73 | 14.54 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | UniProt:A0A287HFD0 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | EnsemblPlantsGene:HORVU2Hr1G025790 | EnsemblPlants:HORVU2Hr1G025790.1 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI000B481F3D | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:81221019..81224194
Molecular Weight (calculated)
113938.0 Da
IEP (calculated)
5.589
GRAVY (calculated)
-0.872
Length
1019 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGDDESAS RLHRREKDED RDRDRYHSSS RRRHDHSSLR HHRDGDRDRD RHHRNKERDR EEHKARERAE EKEKERQRQE ERHGEKKSRR RNEFDDEENE
0101: DGERHRKSRR RSSHSHHRDP EPEAALLNGD GEEAERQRKK KVEEDEDAEQ RRQKKKMEED ADAEQRRQKK KMEEDADAEQ QGQKKKMEED MGGERLEDEM
0201: ERRRRRVREW QEKKRLEQQE DGAGGVEADG AGKSGAKWSL DGEESDEDAG AGTDAMDVDV PNGETSGASM EEDEIDPLDA FMNSIQLSPA TTLRESAVAY
0301: YGEYHAGGMV SNDATGNVDK KTPMEAAPTG RIMQGDESDS DYSDEDPEGG SELINLVKKT KAEKLVTADH SKIDYQPFRK NFYTEAKDIK EMPAEAAAAY
0401: REQLDLKVRG KGVPKPIKAW VQSGLTSKLL GTIKKLGFDT PMAIQAQALP VIMSGRDCIG VAKTGSGKTL AFVLPMLRHV KDQPPAAPGD GPVGLVMAPT
0501: RELVVQIYSD IKKFSKAFGV NCVAVYGGCA VAQQISELKR GAEIVVCTPG RMIDVLCTGA GKITNLRRVT FLVLDEADRM FDMGFEPQIT RIVQNTRPDR
0601: QTVLFSATFP RQVEMLARRV LAKPVEIQMG GRSVVNKDIA QLVEVRPDAQ RFLRLLELLG EWSAKGKILV FVRSQDKCDS LLKELFQHGY PCLSLHGGKD
0701: QDDRESTLAD FKSNVCSLLI ATSVAARGLD VKDLELVVNY DVTNHYEDYV HRVGRTGRAG RKGCAVTFIS DEEERYAPDL VKALELSGQA VPEDLKALAD
0801: RFMAKVKQGT EKAHGTGYGG SGYKFDHEEE EARMSLRRAQ GRAHGYEEDE PEQDSDHTGE EEDDGGAAAL AAPPTMAPSN ASQPALLPPP AAQNGAAAVA
0901: VDVQRVLARI QAQAAPEHYQ AELEINDFPQ HARWKVTRRE TLAPIEEWTG AAVTTRGTFI PPGQIVAANQ RKLYLYIEGP NESSVNKAKA QLKSVVEDCA
1001: NQALNLPITI LDFSDKQFL
0101: DGERHRKSRR RSSHSHHRDP EPEAALLNGD GEEAERQRKK KVEEDEDAEQ RRQKKKMEED ADAEQRRQKK KMEEDADAEQ QGQKKKMEED MGGERLEDEM
0201: ERRRRRVREW QEKKRLEQQE DGAGGVEADG AGKSGAKWSL DGEESDEDAG AGTDAMDVDV PNGETSGASM EEDEIDPLDA FMNSIQLSPA TTLRESAVAY
0301: YGEYHAGGMV SNDATGNVDK KTPMEAAPTG RIMQGDESDS DYSDEDPEGG SELINLVKKT KAEKLVTADH SKIDYQPFRK NFYTEAKDIK EMPAEAAAAY
0401: REQLDLKVRG KGVPKPIKAW VQSGLTSKLL GTIKKLGFDT PMAIQAQALP VIMSGRDCIG VAKTGSGKTL AFVLPMLRHV KDQPPAAPGD GPVGLVMAPT
0501: RELVVQIYSD IKKFSKAFGV NCVAVYGGCA VAQQISELKR GAEIVVCTPG RMIDVLCTGA GKITNLRRVT FLVLDEADRM FDMGFEPQIT RIVQNTRPDR
0601: QTVLFSATFP RQVEMLARRV LAKPVEIQMG GRSVVNKDIA QLVEVRPDAQ RFLRLLELLG EWSAKGKILV FVRSQDKCDS LLKELFQHGY PCLSLHGGKD
0701: QDDRESTLAD FKSNVCSLLI ATSVAARGLD VKDLELVVNY DVTNHYEDYV HRVGRTGRAG RKGCAVTFIS DEEERYAPDL VKALELSGQA VPEDLKALAD
0801: RFMAKVKQGT EKAHGTGYGG SGYKFDHEEE EARMSLRRAQ GRAHGYEEDE PEQDSDHTGE EEDDGGAAAL AAPPTMAPSN ASQPALLPPP AAQNGAAAVA
0901: VDVQRVLARI QAQAAPEHYQ AELEINDFPQ HARWKVTRRE TLAPIEEWTG AAVTTRGTFI PPGQIVAANQ RKLYLYIEGP NESSVNKAKA QLKSVVEDCA
1001: NQALNLPITI LDFSDKQFL
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.