Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72529 | Canola | cytosol | 38.16 | 61.32 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 45.75 | 55.52 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 57.94 | 55.29 |
| EES14596 | Sorghum | nucleus | 57.34 | 54.05 |
| AT3G09620.2 | Thale cress | nucleus | 53.35 | 53.94 |
| KRH77709 | Soybean | nucleus | 59.14 | 53.62 |
| Zm00001d024533_P001 | Maize | nucleus | 57.04 | 53.62 |
| PGSC0003DMT400011665 | Potato | nucleus | 59.54 | 53.45 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 61.24 | 53.44 |
| KRH27757 | Soybean | nucleus | 58.84 | 53.21 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 56.44 | 53.0 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 55.94 | 52.68 |
| Solyc12g098700.1.1 | Tomato | nucleus | 60.24 | 52.57 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 53.85 | 52.48 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 56.04 | 52.33 |
| OQU79814 | Sorghum | nucleus | 51.45 | 52.18 |
| CDY31513 | Canola | nucleus | 56.64 | 51.27 |
| AT1G20920.3 | Thale cress | nucleus | 59.44 | 51.03 |
| Bra025856.1-P | Field mustard | nucleus | 59.54 | 50.9 |
| CDY44720 | Canola | nucleus | 43.66 | 50.58 |
| Bra029779.1-P | Field mustard | nucleus | 44.56 | 50.28 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 49.75 | 48.97 |
| CDY41597 | Canola | nucleus | 37.76 | 48.9 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 48.75 | 47.89 |
| GSMUA_Achr8P01340_001 | Banana | cytosol | 15.88 | 41.51 |
| GSMUA_Achr10P... | Banana | cytosol | 17.28 | 34.81 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 20.78 | 31.37 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 21.18 | 30.55 |
| GSMUA_Achr9P25390_001 | Banana | mitochondrion | 12.39 | 27.68 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 14.98 | 27.42 |
| GSMUA_Achr8P15350_001 | Banana | plastid | 15.78 | 26.64 |
| GSMUA_Achr11P... | Banana | nucleus | 14.89 | 25.82 |
| GSMUA_Achr5P14880_001 | Banana | cytosol, plastid | 15.48 | 25.58 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 13.69 | 25.28 |
| GSMUA_Achr6P29700_001 | Banana | plastid | 14.39 | 24.91 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 12.49 | 23.72 |
| GSMUA_Achr4P17320_001 | Banana | plastid | 11.29 | 22.16 |
| GSMUA_Achr5P06030_001 | Banana | nucleus | 15.58 | 21.7 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 15.18 | 19.34 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 15.08 | 14.3 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSMUA_Achr10G21130_001 | EnsemblPlants:GSMUA_Achr10P21130_001 | EnsemblPlants:GSMUA_Achr10T21130_001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | UniProt:M0RK38 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0002959062 | SEG:seg | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr10G21130_001]
Coordinates
chr10:+:26884907..26889396
Molecular Weight (calculated)
111993.0 Da
IEP (calculated)
10.145
GRAVY (calculated)
-0.684
Length
1001 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVDRTQDRNQ LVGRQKSKGA TILFSYAVLL SGVICSKVVL VLKRQQENLR STHTTRSRVY REAFLRFVRL FFVVLVRPHL VESREWFPHV VFAIVRVSST
0101: RWTTVSRGRR SRGGAIGKGL KRRGAATATA IGTSTGTGTL SAAIARAGGP SGSTASRASI TVILATKRRG RERGRGRRRR IRSAPKRGPE IGRRRGIGIE
0201: KTGIGKERRG RGRGRRRGKR RKPGRIEKRR GRGPEKGRRR NERRRIERGK EKERGRGQRR SGGGWKQSSR VDRHREGSED NRKSRAVEEE MDNKETKTRE
0301: EVLEEEQRKL DEEIDKRRHG DGEAMAVDPV DEDVAPQDSE EGNDNGEEEI DPLDAFMMST ASKEVVINGG RQRKGEKNAM GRIIPGEDSD PDYEDLENEE
0401: VAVEDEDDEE FMKRVKKTKA EKLSIVDHSK IQYLPFRKNL YIELKEISRM SAEEVSAYRK QLELKIHGKD KLNFEKPMPI QAQALPIIMS GRDCIGIAKT
0501: GSGKTLAFLV QQIYSDIKNE LKRGTEIVVC TPGRMIDILC TSGGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNTR PDRQTVLFSA TFPRQVEILA
0601: RKVLNKPVEI QVGGRSVVNK DITQLVEVRP ESERFLRLLE LLGEWYEKGK ILIFVHSQDK CDALFRDLLK HGYPCLSLHG AKDQTDREST ISDFKSNICN
0701: LLIATSIAAR GLDVKELELV VNFDVPNHYE DYVHRVGRTG RAGRKGCAIT FISQEDERYA PDLVKALELS EQAVPADLKA LADGFMAKVN QGTEHAHGTG
0801: YGGSGFKFNE EEDEARKAAK KAQAREYGFE EDKSDSDSED EGVRKAGGDL SQAAAIAAQV AALAAVSKVA NTSMPVQVAT QLPFAGALPS GNLSTEAMPQ
0901: HYEAELEIND FPQNARWKVT HKETLGPISE WTGAAITTRG QYFPPGKIAG PGERKLYLYI EGPTESSVKK AKAEVKRVLE DYTAQALNLP SASQPGKYSV
1001: I
0101: RWTTVSRGRR SRGGAIGKGL KRRGAATATA IGTSTGTGTL SAAIARAGGP SGSTASRASI TVILATKRRG RERGRGRRRR IRSAPKRGPE IGRRRGIGIE
0201: KTGIGKERRG RGRGRRRGKR RKPGRIEKRR GRGPEKGRRR NERRRIERGK EKERGRGQRR SGGGWKQSSR VDRHREGSED NRKSRAVEEE MDNKETKTRE
0301: EVLEEEQRKL DEEIDKRRHG DGEAMAVDPV DEDVAPQDSE EGNDNGEEEI DPLDAFMMST ASKEVVINGG RQRKGEKNAM GRIIPGEDSD PDYEDLENEE
0401: VAVEDEDDEE FMKRVKKTKA EKLSIVDHSK IQYLPFRKNL YIELKEISRM SAEEVSAYRK QLELKIHGKD KLNFEKPMPI QAQALPIIMS GRDCIGIAKT
0501: GSGKTLAFLV QQIYSDIKNE LKRGTEIVVC TPGRMIDILC TSGGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNTR PDRQTVLFSA TFPRQVEILA
0601: RKVLNKPVEI QVGGRSVVNK DITQLVEVRP ESERFLRLLE LLGEWYEKGK ILIFVHSQDK CDALFRDLLK HGYPCLSLHG AKDQTDREST ISDFKSNICN
0701: LLIATSIAAR GLDVKELELV VNFDVPNHYE DYVHRVGRTG RAGRKGCAIT FISQEDERYA PDLVKALELS EQAVPADLKA LADGFMAKVN QGTEHAHGTG
0801: YGGSGFKFNE EEDEARKAAK KAQAREYGFE EDKSDSDSED EGVRKAGGDL SQAAAIAAQV AALAAVSKVA NTSMPVQVAT QLPFAGALPS GNLSTEAMPQ
0901: HYEAELEIND FPQNARWKVT HKETLGPISE WTGAAITTRG QYFPPGKIAG PGERKLYLYI EGPTESSVKK AKAEVKRVLE DYTAQALNLP SASQPGKYSV
1001: I
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.