Factsheet for GSMUA_Achr8P15350_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P29700_001	Banana	plastid	80.1	82.18
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	81.28	79.54
Os03t0805200-01	Rice	plastid	77.4	72.06
Os07t0202100-01	Rice	nucleus	77.23	71.79
GSMUA_Achr4P17320_001	Banana	plastid	61.21	71.18
KXG37329	Sorghum	cytosol, plastid	74.54	69.61
KXG34634	Sorghum	plastid	75.72	69.5
TraesCS5B01G464500.2	Wheat	cytosol	74.03	69.24
TraesCS5D01G465100.1	Wheat	cytosol	74.03	69.03
TraesCS5A01G454600.1	Wheat	golgi	73.86	68.87
Zm00001d007755_P001	Maize	plastid	75.04	68.78
Zm00001d007757_P004	Maize	plastid	75.72	67.82
HORVU5Hr1G109340.2	Barley	plastid	74.37	66.62
GSMUA_Achr9P25390_001	Banana	mitochondrion	50.08	66.29
GSMUA_Achr5P06030_001	Banana	nucleus	59.7	49.24
GSMUA_Achr8P01340_001	Banana	cytosol	29.34	45.43
GSMUA_Achr10P...	Banana	cytosol	31.2	37.22
GSMUA_Achr11P...	Banana	nucleus	29.01	29.81
GSMUA_Achr2P09160_001	Banana	cytosol	27.49	29.8
GSMUA_Achr1P13820_001	Banana	mitochondrion	26.81	29.34
GSMUA_Achr3P01410_001	Banana	nucleus	24.45	27.51
GSMUA_Achr1P24870_001	Banana	cytosol	30.52	27.3
GSMUA_Achr1P13000_001	Banana	cytosol	31.37	26.8
GSMUA_Achr8P31890_001	Banana	nucleus	32.72	24.68
GSMUA_Achr1P15980_001	Banana	cytosol	33.22	18.66
GSMUA_Achr10P...	Banana	cytosol	26.64	15.78

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr8G15350_001	EnsemblPlants:GSMUA_Achr8P15350_001	EnsemblPlants:GSMUA_Achr8T15350_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0TQN8	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296C492
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 37 [Source:GMGC_GENE;Acc:GSMUA_Achr8G15350_001]

Coordinates

chr8:+:13040031..13045116

Molecular Weight (calculated)

64368.5 Da

IEP (calculated)

8.322

GRAVY (calculated)

-0.469

Length

593 amino acids

Sequence
(BLAST)

001: MRTSWADAVA TADSSAAATS ASPSNVAAVS VAPSRGGGRA AYVPPHLRNR QSSSDRWGGG PIRDVGRPGS AGGRGGGGGR HSRIGGWDRR EREANPFSND
101: DDTTEADFDS QETSGINFDA YEDIPVETSG ENVPPPVNTF AEIDLGDALN ENIRRCKYVK PTPVQRHAIP ISLGGRDLMA CAQTGSGKTA AFCFPIISGI
201: MRGPSGPRQR GSRTVYPLAL ILSPTRELSI QIHEEARKFA YQTGVRVVVA YGGAPINQQL RDLERGVEIL VATPGRLVDL LERARVSLQH IRYLALDEAD
301: RMLDMGFEPQ IRRIVEQMDM PPRGQRQTML FSATFPKEIQ RLASDFLNNY IFLAVGRVGS STDLIVQRVE FVPESDKRSY LMDLLHGQRD TGVHGKQALT
401: LVFVETKRGA DSLEHWLCMN GFPATTIHGD RTQQEREHAL RSFKSGATPI LVATDVAARG LDIPHVAHVI NFDLPNDIDD YVHRIGRTGR AGKTGRATAF
501: FNESNSSLAR ALTELMQESN QEVPDWLARF STAHSYGGSG RHRRTGGARF GGRDFRRDST FSRGGGGDYG YGGGSYGASS GYGGSSVATS AWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.