Factsheet for Os03t0805200-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 18203134
plasma membrane: 27800704
plastid: 27992503

msms PMID: 18203134 doi

G Li, BR Nallamilli, F Tan, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0202100-01	Rice	nucleus	87.91	87.77
TraesCS5A01G454600.1	Wheat	golgi	87.28	87.42
TraesCS5D01G465100.1	Wheat	cytosol	87.13	87.26
TraesCS5B01G464500.2	Wheat	cytosol	86.66	87.07
KXG37329	Sorghum	cytosol, plastid	86.34	86.61
HORVU5Hr1G109340.2	Barley	plastid	86.5	83.23
GSMUA_Achr8P15350_001	Banana	plastid	72.06	77.4
GSMUA_Achr6P29700_001	Banana	plastid	68.92	75.95
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	71.74	75.41
Os11t0599500-00	Rice	nucleus, plasma membrane	71.74	73.35
GSMUA_Achr4P17320_001	Banana	plastid	53.69	67.06
GSMUA_Achr9P25390_001	Banana	mitochondrion	45.68	64.96
Os06t0602400-01	Rice	nucleus, plasma membrane	46.0	60.54
Os01t0197200-01	Rice	plasma membrane	29.51	38.06
Os02t0150100-02	Rice	cytosol	26.06	36.09
Os01t0911100-01	Rice	nucleus, plastid	25.12	33.54
Os07t0301200-01	Rice	cytosol	26.37	32.81
Os06t0697200-00	Rice	cytosol	26.84	27.63
Os01t0172200-01	Rice	cytosol	32.65	27.4
Os02t0150000-00	Rice	mitochondrion	7.22	26.59
Os01t0549400-01	Rice	nucleus	32.34	26.01
Os03t0308500-01	Rice	mitochondrion	31.24	25.84
Os03t0708600-02	Rice	nucleus	29.36	25.41
Os08t0154225-00	Rice	cytosol	22.61	24.2
Os08t0159900-01	Rice	extracellular, nucleus	30.14	18.3
Os08t0154200-01	Rice	cytosol, nucleus	1.41	4.21
Os01t0911000-01	Rice	nucleus	0.31	0.6

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4334493	ProteinID:AAS07217.1	EMBL:AB042643	ProteinID:ABF99430.1
EMBL:AK066048	ProteinID:BAF13540.1	ProteinID:BAS86934.1	InterPro:DEAD/DEAH_box_helicase_dom	ProteinID:EEE60132.1	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EnsemblPlantsGene:Os03g0805200	EnsemblPlants:Os03t0805200-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	UniProt:Q75HJ0
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000239521	RefSeq:XP_015630541.1
SEG:seg	:	:	:	:	:

Description

RNA helicase 37Similar to RNA helicase (Fragment). (Os03t0805200-01)

Coordinates

chr3:-:33612511..33617779

Molecular Weight (calculated)

67669.5 Da

IEP (calculated)

8.001

GRAVY (calculated)

-0.425

Length

637 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATG AAPTPVANHQ NSRPTRSAYV PPHLRGQAPT TTAAPAPAPG PAAVQPSASV QPSGYAAIVG GSRWAGPASG DGTGAVGGPR
101: QSVGGRGGGG GGGGGWNSRP GWDRRDREPN PFANSEAEEA TEVDFDTANT GINFDAYEDI PVETSGHDVP PPVNTFAEID LGDALNENIR RCKYVKPTPV
201: QRYAIPISIA GRDLMACAQT GSGKTAAFCF PIISGIMSSR PPQRPRGSRT AYPLALILSP TRELSVQIHE EARKFAYQTG VRVVVAYGGA PIHQQLRELE
301: RGVEILVATP GRLMDLLERA RVSLQMVKYL ALDEADRMLD MGFEPQIRKI VEQMDMPPRG VRQTMLFSAT FPKEIQRMAS DFLADYIFLA VGRVGSSTDL
401: IAQRVEFVLE ADKRSYLMDL LHAQKANGTH GKQALTLVFV ETKRGADALE NWLYTNGFPA TSIHGDRTQQ EREYALRSFK SGATPILVAT DVAARGLDIP
501: HVAHVINFDL PNDIDDYVHR IGRTGRAGKS GLATAFFNEG NLSLARPLCE LMQEANQEVP QWLERYSARS SFGGGGGRNR RSGGARFGGR DFRRDNRGGG
601: GGGYGGGGGG YGGGGYGGGG GYGGGYGGGQ GSTSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.