CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0805200-01	Rice	plastid	86.61	86.34
TraesCS5A01G454600.1	Wheat	golgi	84.57	84.43
TraesCS5D01G465100.1	Wheat	cytosol	84.41	84.28
TraesCS5B01G464500.2	Wheat	cytosol	84.09	84.23
HORVU5Hr1G109340.2	Barley	plastid	83.78	80.36
KXG34634	Sorghum	plastid	81.42	80.03
GSMUA_Achr8P15350_001	Banana	plastid	69.61	74.54
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	70.24	73.6
GSMUA_Achr6P29700_001	Banana	plastid	66.3	72.84
KXG28851	Sorghum	cytosol, plastid	68.35	69.44
GSMUA_Achr4P17320_001	Banana	plastid	52.28	65.1
GSMUA_Achr9P25390_001	Banana	mitochondrion	44.41	62.95
OQU76674	Sorghum	cytosol	50.08	56.08
KXG31614	Sorghum	cytosol	29.45	38.01
EES04084	Sorghum	cytosol	31.18	34.26
EER96257	Sorghum	cytosol	26.77	33.2
OQU83862	Sorghum	nucleus	28.5	28.19
EER92293	Sorghum	cytosol	27.4	28.16
OQU86230	Sorghum	cytosol	31.34	27.83
KXG32714	Sorghum	nucleus	32.44	26.04
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	30.08	24.93
KXG37746	Sorghum	nucleus	30.08	23.64
OQU79814	Sorghum	nucleus	29.13	18.74
EES14596	Sorghum	nucleus	29.92	17.89
OQU84042	Sorghum	cytosol	35.43	16.21

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1B6QHD4	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KXG37329	ProteinID:KXG37329	ProteinID:KXG37329.1	ProteinID:KXG37330.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G049500
SUPFAM:SSF52540	UniParc:UPI0001C80CC8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:3619300..3624307

Molecular Weight (calculated)

67911.9 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.427

Length

635 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATV TATAPAANHQ NSRPTLSAYV PPHLRGRSGG PLPENKAAPA AAPAPADVRP ATVQPSGYAA VVGGGSRWAG PAVGGSGGGG
101: GSAIVGPRQG GGGRGGGWNS RPGWDRRDRE PNPFANTEAA DVDFESQENT GINFDAYEDI PVETSGHDVP PPVNTFAEID LGDAVNENIR RCKYVKPTPV
201: QRHAIPIANA GRDLMACAQT GSGKTAAFCF PIISGILKSR DLRPPQTQRQ RARAACPLAL ILSPTRELSM QIHEEAKKFS YQTGVRVVVA YGGAPIHQQL
301: RELERGVEIL VATPGRLMDL LERARVSLQT IKYLTLDEAD RMLDMGFEPQ IRKIVEQMDM PPRGVRQTML FSATFPKEIQ RLASDFLADY IFLAVGRVGS
401: STDLIAQRVE FVLEADKRSY LMDLLHAQKA NGTHGKQSLT LVFVETKRGA DALEDWLFKN GFPATSIHGD RTQQEREYAL RSFKSGATPI LVATDVAARG
501: LDIPHVAHVI NFDLPNDIDD YVHRIGRTGR AGKSGLATAF FNEGNLSLAR PLCDLMHEAN QEVPTWLENY AARSSYGGGG GRNRRSGGAR FGGRDFRRDR
601: DFRGGGGGGG YSGGGYGGGG GYGGSYGGGA TSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.