Factsheet for HORVU5Hr1G109340.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	nucleus
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G464500.2	Wheat	cytosol	93.81	97.95
TraesCS5A01G454600.1	Wheat	golgi	93.96	97.8
TraesCS5D01G465100.1	Wheat	cytosol	93.81	97.64
Os03t0805200-01	Rice	plastid	83.23	86.5
KXG37329	Sorghum	cytosol, plastid	80.36	83.78
GSMUA_Achr8P15350_001	Banana	plastid	66.62	74.37
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	65.86	71.95
GSMUA_Achr6P29700_001	Banana	plastid	62.54	71.63
HORVU4Hr1G031280.1	Barley	cytosol, plastid	64.2	70.72
GSMUA_Achr4P17320_001	Banana	plastid	48.79	63.33
GSMUA_Achr9P25390_001	Banana	mitochondrion	42.75	63.17
HORVU7Hr1G084210.1	Barley	cytosol	46.37	50.33
HORVU1Hr1G083090.1	Barley	cytosol	15.86	41.83
HORVU3Hr1G031710.1	Barley	mitochondrion	14.95	37.93
HORVU3Hr1G092600.1	Barley	cytosol	29.0	33.45
HORVU3Hr1G092610.1	Barley	cytosol	29.0	33.45
HORVU3Hr1G018850.7	Barley	cytosol	27.49	33.27
HORVU5Hr1G037290.3	Barley	nucleus	25.68	32.08
HORVU1Hr1G091050.3	Barley	nucleus	27.04	29.93
HORVU5Hr1G048040.1	Barley	plastid	24.32	28.15
HORVU3Hr1G024610.13	Barley	cytosol, plastid	28.85	27.02
HORVU3Hr1G022710.1	Barley	mitochondrion	25.38	26.33
HORVU6Hr1G080730.2	Barley	cytosol	12.39	25.08
HORVU4Hr1G053550.2	Barley	mitochondrion	29.91	24.94
HORVU4Hr1G007110.17	Barley	mitochondrion	29.0	24.94
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	14.05	24.47
HORVU2Hr1G025790.1	Barley	nucleus	28.4	18.45
HORVU0Hr1G020490.1	Barley	nucleus	29.15	18.11
HORVU3Hr1G018170.3	Barley	cytosol	32.93	15.77

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287SNY1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:HORVU5Hr1G109340	EnsemblPlants:HORVU5Hr1G109340.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TMHMM:TMhelix	UniParc:UPI000B474479	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr5H:-:629626336..629630982

Molecular Weight (calculated)

70062.7 Da

IEP (calculated)

7.576

GRAVY (calculated)

-0.278

Length

662 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATG AAAAPVANHQ NSRPTRSSYV PPHLRGGGRS PDNQVLAAGP TPAGAYPSGA VQPSGGYAAA VGGTRWAAPP GGGSAGVGVV
101: RQGGGGGRGG VGGGGGGWNS RPGGWGDRRD REPNPFGDSE PAAVDVDFES QANTGINFDA YEDIPVETSG HDVPAAVNTF AEIDLGDALN ENIRRCKYVR
201: PTPVQRHAIP IVIGGRDLMA CAQTGSGKTA AFCFPIISGI LKTKPPIRPR ARTAFPLALI LSPTRELSVQ VGDCFGFIWG ALIYFVFISY MILFVSQIHE
301: EAKKFAYQTG VKACVAYGGA PIHQQLRELE RGVDILVATP GRLMDLLERA RVSLQMVNYL ALDEADRMLD MGFEPQIRKI VEQMDMPPRG VRQTMLFSAT
401: FPKEIQRLAS DFLADYIFLA VGRVGSSTDL IAQRVEFVLE ADKRSYLMDL IHAQKANDVP GKNSLTLVFV ETKRGADALE NWLYTNGFPA TSIHGDRTQQ
501: EREYALRSFK SGATPILVAT DVAARGLDIP DVAHVINFDL PNDIDDYVHR IGRTGRAGKS GLATAFFNEG NMSLARPLCE LMQEANQEVP QWLERYSARS
601: SFGGGGGGRN RRSGGGGARF GGRDFRRDTR GGGGGGGGGY GGGGGGYGGG GGYGGGASSS WD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.