Factsheet for GSMUA_Achr5P14880_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P15350_001	Banana	plastid	79.54	81.28
GSMUA_Achr6P29700_001	Banana	plastid	75.25	78.89
GSMUA_Achr4P17320_001	Banana	plastid	62.21	73.92
Os03t0805200-01	Rice	plastid	75.41	71.74
Os07t0202100-01	Rice	nucleus	74.75	71.0
KXG37329	Sorghum	cytosol, plastid	73.6	70.24
TraesCS5A01G454600.1	Wheat	golgi	72.11	68.71
TraesCS5D01G465100.1	Wheat	cytosol	71.95	68.55
TraesCS5B01G464500.2	Wheat	cytosol	71.62	68.45
KXG34634	Sorghum	plastid	72.94	68.42
Zm00001d007755_P001	Maize	plastid	72.61	68.01
Zm00001d007757_P004	Maize	plastid	72.94	66.77
HORVU5Hr1G109340.2	Barley	plastid	71.95	65.86
GSMUA_Achr9P25390_001	Banana	mitochondrion	48.18	65.18
GSMUA_Achr5P06030_001	Banana	nucleus	56.93	47.98
GSMUA_Achr8P01340_001	Banana	cytosol	28.88	45.69
GSMUA_Achr10P...	Banana	cytosol	30.86	37.63
GSMUA_Achr11P...	Banana	nucleus	29.04	30.5
GSMUA_Achr2P09160_001	Banana	cytosol	26.73	29.62
GSMUA_Achr1P13820_001	Banana	mitochondrion	25.91	28.97
GSMUA_Achr1P24870_001	Banana	cytosol	29.54	27.0
GSMUA_Achr3P01410_001	Banana	nucleus	23.27	26.76
GSMUA_Achr1P13000_001	Banana	cytosol	30.36	26.51
GSMUA_Achr8P31890_001	Banana	nucleus	32.51	25.06
GSMUA_Achr1P15980_001	Banana	cytosol	32.34	18.56
GSMUA_Achr10P...	Banana	cytosol	25.58	15.48

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSMUA_Achr5G14880_001	EnsemblPlants:GSMUA_Achr5P14880_001	EnsemblPlants:GSMUA_Achr5T14880_001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SYL7	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002959A2B
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 37 [Source:GMGC_GENE;Acc:GSMUA_Achr5G14880_001]

Coordinates

chr5:+:10780994..10798989

Molecular Weight (calculated)

65576.0 Da

IEP (calculated)

7.653

GRAVY (calculated)

-0.416

Length

606 amino acids

Sequence
(BLAST)

001: MRTSWADSVA NAESSAFATG ASASTTNNNA ADATAAAVVS APRPPRAAYV PPHVRNRATS SELPASPSAD NMGRTGSGGG GRSVGGGWGS RSGGWDGRVR
101: EVNPFVNEEE TTEVAFDGQE NTGINFDAYE DIPVETSGDN VPPPVSTFAE IDLGDAVNEN IRRCKYVKPT PVQRHAIPIL LAGRDLMACA QTGSGKTAAF
201: CFPIISGIMR GPPSQRQRGS RTVCPPALIL SPTRELSIQI HEEARKFSYQ TGVRAVVAYG GAPINQQLRD LERGVDILVA TPGRLVDLLE RARVSLQNIR
301: YLALDEADRM LDMGFEPQIR RIVEQMDMPP RGERQTMLFS ATFPREIQRL ASDFLFNYIF LAVGRVGSST ELIVQRVEFV LEPDKRSYLM DLLHAQKVNG
401: AYGKQALTLV FVETKKGADS LEHWLSMHGF PATTIHGDRT QQERERALRS FKSGVTPILV ATDVAARGLD IPHVSHVINF DLPNDIDDYV HRIGRTGRAG
501: KSGLATAFFN ENNSSLARPL AELMQESSQE VPDWLSRYAT TRSSYGGRNR RSGGARFGGR DFRRDSSTRS GGGEYYGGGN GYGGGSYAAS GYGGGYGNPG
601: LTSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.