Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P01340_001 | Banana | cytosol | 19.41 | 53.52 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 38.35 | 51.53 |
| GSMUA_Achr10P... | Banana | cytosol | 23.2 | 49.3 |
| CDX74101 | Canola | cytosol | 40.34 | 48.63 |
| CDY08048 | Canola | nucleus | 40.15 | 48.18 |
| Bra001200.1-P | Field mustard | cytosol | 46.02 | 46.2 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 49.81 | 45.62 |
| AT3G06480.1 | Thale cress | cytosol | 46.12 | 44.76 |
| KRH36905 | Soybean | nucleus | 48.3 | 43.78 |
| Solyc01g057760.2.1 | Tomato | nucleus | 49.43 | 42.75 |
| KRH11875 | Soybean | endoplasmic reticulum | 48.58 | 42.71 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 49.15 | 39.2 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 49.34 | 39.06 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 49.05 | 38.46 |
| OQU84042 | Sorghum | cytosol | 50.0 | 38.04 |
| Zm00001d007719_P010 | Maize | cytosol | 48.67 | 37.99 |
| Zm00001d048632_P001 | Maize | cytosol | 49.53 | 37.84 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 49.05 | 37.48 |
| GSMUA_Achr8P15350_001 | Banana | plastid | 18.66 | 33.22 |
| GSMUA_Achr9P25390_001 | Banana | mitochondrion | 13.92 | 32.81 |
| GSMUA_Achr5P14880_001 | Banana | cytosol, plastid | 18.56 | 32.34 |
| GSMUA_Achr11P... | Banana | nucleus | 17.61 | 32.24 |
| GSMUA_Achr6P29700_001 | Banana | plastid | 17.61 | 32.18 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 15.15 | 29.25 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 14.68 | 28.6 |
| GSMUA_Achr5P06030_001 | Banana | nucleus | 18.94 | 27.82 |
| GSMUA_Achr4P17320_001 | Banana | plastid | 13.16 | 27.25 |
| GSMUA_Achr1P24870_001 | Banana | cytosol | 16.95 | 27.0 |
| GSMUA_Achr1P13000_001 | Banana | cytosol | 17.61 | 26.8 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 12.5 | 25.05 |
| GSMUA_Achr10P... | Banana | cytosol | 14.3 | 15.08 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | EnsemblPlantsGene:GSMUA_Achr1G15980_001 | EnsemblPlants:GSMUA_Achr1P15980_001 | EnsemblPlants:GSMUA_Achr1T15980_001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:M0S0A6 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF00397 | ScanProsite:PS00039 |
| ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | UniParc:UPI0002961AFD | InterPro:WW_dom | InterPro:WW_dom_sf | SEG:seg |
Description
retrotransposon protein, putative, unclassified, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G15980_001]
Coordinates
chr1:-:11977182..11989878
Molecular Weight (calculated)
114781.0 Da
IEP (calculated)
9.765
GRAVY (calculated)
-0.650
Length
1056 amino acids
Sequence
(BLAST)
(BLAST)
0001: MATAEAAAGS LGPHYAPDDP TLPKPWKGLV DGNTGLLYYW NPETNITQYE RPASSVPPLP PGPPPSASVP KLAPIPMAGN LPPNGTALQQ GTQQIVQQAA
0101: LPAQQQQQPS QHLFQQQQQQ SSQQLPGQQP GPQALLPNAQ QIPIQQPHHS TNQQMTQQQT SRQYMQIQSQ HAPYQHEPQG PQMTYQPGQQ PQSLQIPNQQ
0201: HPKESLTLNQ QGQQTHGLQI PLSQGLPILS QQTHHGLQVG QQQGRQSQGL QAGSQLVQQP QGQQPRFPWV EDALHQEGKQ GSLSSSGIAS SSHHLPGLVP
0301: QVSIPSVGGR PPQSPNQLGG SVQNVSSSQV GIDTSYGKQQ QAGSAVPSPM GHPVVHPPIG GKVAYDEDEH EFYPSSRMER PMMYPHQPKL AAIPLPQRQP
0401: DGGIRPQFDL PSLSGGMSMG PQHALPNMYG RSAFPNSGIL GPSQVGFGSS DFSDVSAADA YRQHHEVTAM GNDVPPPFMT FEATGFPPEI LREMHLAGFS
0501: SPTPIQAQTW PVALLKRDIV AIAKTGSGKT LGYLIPAFIH LRRCRNNPQF GPTVLVLAPT RELASQIQDE AFKFGRSSRI SCTCLYGGAP KGPQLKEIER
0601: GADIVIATPG RLNDFLEMKK ISFCQVSLLV LDEADRMLDM GFEPQIRKIV NEIPPQRQTL MYTATWPKEV RKIASDLLRN PVQVNIGSVD ELVANKSITQ
0701: HVEVVTQMDK QRRLEQILRT QERGSKVIIF CSTKRQCDQL ARSIGRTFGA ASIHGDKSQG ERDHVLYQFR TGRAPVLVAT DVAARGLDIK DIRVVINYDF
0801: PTGIEDYVHR IGRTGRAGAT GVSYTFFTDQ DWKYATDLVK VLEGANQRVP PEIREMAGRG GPLLSRPRDG INRWDSGGGG GGGRWSAVGG RGMRDGPPGG
0901: FSGRERGRER SYSRSPEMVR TWGYDRSRSA SRSRSSSRSR SRSRSKSWSP RSRSRSRSQS QSRSYDRVKR RSGWDCRPSP VPAAATAPFA TSGSEPPTAA
1001: ATGGPCIVEP EPVAGHQGPA PVVGFEPGLP LSGDMSPMSP GQGNGSLYGN EPPEQT
0101: LPAQQQQQPS QHLFQQQQQQ SSQQLPGQQP GPQALLPNAQ QIPIQQPHHS TNQQMTQQQT SRQYMQIQSQ HAPYQHEPQG PQMTYQPGQQ PQSLQIPNQQ
0201: HPKESLTLNQ QGQQTHGLQI PLSQGLPILS QQTHHGLQVG QQQGRQSQGL QAGSQLVQQP QGQQPRFPWV EDALHQEGKQ GSLSSSGIAS SSHHLPGLVP
0301: QVSIPSVGGR PPQSPNQLGG SVQNVSSSQV GIDTSYGKQQ QAGSAVPSPM GHPVVHPPIG GKVAYDEDEH EFYPSSRMER PMMYPHQPKL AAIPLPQRQP
0401: DGGIRPQFDL PSLSGGMSMG PQHALPNMYG RSAFPNSGIL GPSQVGFGSS DFSDVSAADA YRQHHEVTAM GNDVPPPFMT FEATGFPPEI LREMHLAGFS
0501: SPTPIQAQTW PVALLKRDIV AIAKTGSGKT LGYLIPAFIH LRRCRNNPQF GPTVLVLAPT RELASQIQDE AFKFGRSSRI SCTCLYGGAP KGPQLKEIER
0601: GADIVIATPG RLNDFLEMKK ISFCQVSLLV LDEADRMLDM GFEPQIRKIV NEIPPQRQTL MYTATWPKEV RKIASDLLRN PVQVNIGSVD ELVANKSITQ
0701: HVEVVTQMDK QRRLEQILRT QERGSKVIIF CSTKRQCDQL ARSIGRTFGA ASIHGDKSQG ERDHVLYQFR TGRAPVLVAT DVAARGLDIK DIRVVINYDF
0801: PTGIEDYVHR IGRTGRAGAT GVSYTFFTDQ DWKYATDLVK VLEGANQRVP PEIREMAGRG GPLLSRPRDG INRWDSGGGG GGGRWSAVGG RGMRDGPPGG
0901: FSGRERGRER SYSRSPEMVR TWGYDRSRSA SRSRSSSRSR SRSRSKSWSP RSRSRSRSQS QSRSYDRVKR RSGWDCRPSP VPAAATAPFA TSGSEPPTAA
1001: ATGGPCIVEP EPVAGHQGPA PVVGFEPGLP LSGDMSPMSP GQGNGSLYGN EPPEQT
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.