Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU84042 | Sorghum | cytosol | 90.61 | 88.33 |
| Zm00001d048632_P001 | Maize | cytosol | 88.99 | 87.12 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 69.92 | 71.45 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 70.36 | 71.36 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 69.84 | 70.16 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 70.29 | 68.81 |
| Zm00001d008725_P003 | Maize | cytosol | 27.86 | 54.4 |
| Zm00001d039673_P002 | Maize | cytosol | 27.2 | 52.5 |
| CDX74101 | Canola | cytosol | 32.96 | 50.91 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 43.31 | 50.82 |
| CDY08048 | Canola | nucleus | 32.89 | 50.57 |
| Bra001200.1-P | Field mustard | cytosol | 38.36 | 49.33 |
| KRH36905 | Soybean | nucleus | 42.28 | 49.1 |
| AT3G06480.1 | Thale cress | cytosol | 39.32 | 48.9 |
| Zm00001d011155_P012 | Maize | nucleus | 28.23 | 48.79 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 37.99 | 48.67 |
| KRH11875 | Soybean | endoplasmic reticulum | 43.09 | 48.54 |
| Zm00001d044510_P002 | Maize | mitochondrion | 28.68 | 48.38 |
| Solyc01g057760.2.1 | Tomato | nucleus | 41.83 | 46.36 |
| Zm00001d039452_P002 | Maize | cytosol | 17.22 | 42.13 |
| Zm00001d042416_P002 | Maize | extracellular, plasma membrane | 18.4 | 39.03 |
| Zm00001d019449_P004 | Maize | nucleus | 13.6 | 36.22 |
| Zm00001d036897_P001 | Maize | extracellular | 16.33 | 35.99 |
| Zm00001d048924_P001 | Maize | plasma membrane | 15.6 | 34.7 |
| Zm00001d007755_P001 | Maize | plastid | 16.11 | 33.69 |
| Zm00001d007757_P004 | Maize | plastid | 16.04 | 32.78 |
| Zm00001d047502_P001 | Maize | extracellular | 13.01 | 28.48 |
| Zm00001d047633_P002 | Maize | nucleus | 15.89 | 27.99 |
| Zm00001d028898_P011 | Maize | cytosol | 15.52 | 27.27 |
| Zm00001d013453_P001 | Maize | nucleus | 13.45 | 24.8 |
| Zm00001d033704_P007 | Maize | extracellular | 13.45 | 24.66 |
| Zm00001d024533_P001 | Maize | nucleus | 14.93 | 18.97 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | UniProt:A0A1D6F8C9 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001202 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | ProteinID:ONM27450.1 | ProteinID:ONM27457.1 | ProteinID:ONM27464.1 | ProteinID:ONM27470.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF51045 | SUPFAM:SSF52540 |
| UniParc:UPI00022207A0 | InterPro:WW_dom | InterPro:WW_dom_sf | EnsemblPlantsGene:Zm00001d007719 | EnsemblPlants:Zm00001d007719_P010 | EnsemblPlants:Zm00001d007719_T010 |
| SEG:seg | : | : | : | : | : |
Description
DEAD-box ATP-dependent RNA helicase 40
Coordinates
chr2:+:238191960..238200554
Molecular Weight (calculated)
144683.0 Da
IEP (calculated)
9.982
GRAVY (calculated)
-0.779
Length
1353 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAAQEAAAAD SLGPRFAPDD PTLPAPWKGL IDGATLYYWN PETNVTQYEK PAATAGVPPL SAGLPPATPA QVPESAPVAF PQLNVQFGQA GQAGHQERPD
0101: QAAYPQAGQL GQQHTQQPAQ QQPFQQQQPF QQHVQAQHQA SFQHVPYQQQ QTHMPNQPHQ YHSTHPQHMP YQHGLYMQPQ QQQQAPPYSY QADQQPQMRQ
0201: TAYNQAQQPS VPQAAYNQSQ SQQPPMPQSS YDQGQSQQPP MPQPSYNQGQ VQQPPMPQPS YNQGQQSMIP QSAYNQAQQP QIPHGAYNQS QQPLGDRIPQ
0301: GQGQHPQQSL SSHHPAQASQ SPQVSQPQGP KMPTQQGQLQ HGLPFTQHGK TPLSHGQQSP LLKDDDGGVH EGKRTGFPLP LSQQRGQAPL PNQQLPSTHQ
0401: HPGALSSQPN IPGVGGPFYP ARNLPDGPSS AETNNMGFMN SPAQMHQGGA DTNYQKKPVS GHTVPNHVGP SPIRPPMGFD MGNSVGHFER DDPHSYGRFD
0501: GAKALQQQPK LAALPTSQNS MVMHNGPLYP RPDNFGGHNM APPHSVPNPY NLGPLPIGTS VRPPSSMFAP PDFPSVSSAD AYRQHHEVTA MGENVPAPFM
0601: TFEATGFPPE ILREIHAAGF SNPTPIQAQT WPVALQNRDI VAIAKTGSGK TLGYLIPAFI HLRRCHNNPM LGPTVLVLAP TRELASQIQA EVVKFGQSSR
0701: VSCTCLYGGT SKVPQLRELE RGADIVVATP GRLNDILEMK RINLHQVSLL VLDEADRMLD MGFEPQIRKI VDELPNARQT LMYTATWPKE VTKIAGDLLR
0801: DPVQVNIGSI DELVANKSIT QYVEVVPPMD KQRRLEQILG DQERGSKIII FCSTKKMCDQ LARGIGRNFN AVSIHGDKSQ AERDNVLNQF RTGRASVLVA
0901: TDVAARGLDI KDIRVVINYD FPTGIEDYVH RIGRTGRAGA TGVSYTFFSE QDWKYACDLV KLLQGANQLV PPQLQDMAAR SASGGPRNQA SGMSRWDGPG
1001: GRGFEPGVGG PVGYGGVREG PGGFGGREGP GGLGVRESPA MFGGPGGFGD REGPGGFSGH EGHGGFGGRE REGPGGFVGR KGPGGFGGRD GPGSSGFGGR
1101: GQRGSGGFGS RGGASPGGFG GRGGRGDSPG FGGRGRGDFS GFGGRGRGDF SGGRGGRGRG FGGRGRSDRF VSDGRGRYDN RRGFGDKGRD RSYSRSPDRV
1201: RARGYDRRSD SRSISRSRSR SRSWSRSRSR SRSWSRSSSR SHSRSRSRDH GAAPERRPRA RSGFDVLPPA TGAAGPAPVP VPGPAAPPVP APAPEQSLAN
1301: TSSMSPMSPG GLVQPAAAPA GGQPSQGTGA AFPSSPAGET FPGAAAQHPA PDV
0101: QAAYPQAGQL GQQHTQQPAQ QQPFQQQQPF QQHVQAQHQA SFQHVPYQQQ QTHMPNQPHQ YHSTHPQHMP YQHGLYMQPQ QQQQAPPYSY QADQQPQMRQ
0201: TAYNQAQQPS VPQAAYNQSQ SQQPPMPQSS YDQGQSQQPP MPQPSYNQGQ VQQPPMPQPS YNQGQQSMIP QSAYNQAQQP QIPHGAYNQS QQPLGDRIPQ
0301: GQGQHPQQSL SSHHPAQASQ SPQVSQPQGP KMPTQQGQLQ HGLPFTQHGK TPLSHGQQSP LLKDDDGGVH EGKRTGFPLP LSQQRGQAPL PNQQLPSTHQ
0401: HPGALSSQPN IPGVGGPFYP ARNLPDGPSS AETNNMGFMN SPAQMHQGGA DTNYQKKPVS GHTVPNHVGP SPIRPPMGFD MGNSVGHFER DDPHSYGRFD
0501: GAKALQQQPK LAALPTSQNS MVMHNGPLYP RPDNFGGHNM APPHSVPNPY NLGPLPIGTS VRPPSSMFAP PDFPSVSSAD AYRQHHEVTA MGENVPAPFM
0601: TFEATGFPPE ILREIHAAGF SNPTPIQAQT WPVALQNRDI VAIAKTGSGK TLGYLIPAFI HLRRCHNNPM LGPTVLVLAP TRELASQIQA EVVKFGQSSR
0701: VSCTCLYGGT SKVPQLRELE RGADIVVATP GRLNDILEMK RINLHQVSLL VLDEADRMLD MGFEPQIRKI VDELPNARQT LMYTATWPKE VTKIAGDLLR
0801: DPVQVNIGSI DELVANKSIT QYVEVVPPMD KQRRLEQILG DQERGSKIII FCSTKKMCDQ LARGIGRNFN AVSIHGDKSQ AERDNVLNQF RTGRASVLVA
0901: TDVAARGLDI KDIRVVINYD FPTGIEDYVH RIGRTGRAGA TGVSYTFFSE QDWKYACDLV KLLQGANQLV PPQLQDMAAR SASGGPRNQA SGMSRWDGPG
1001: GRGFEPGVGG PVGYGGVREG PGGFGGREGP GGLGVRESPA MFGGPGGFGD REGPGGFSGH EGHGGFGGRE REGPGGFVGR KGPGGFGGRD GPGSSGFGGR
1101: GQRGSGGFGS RGGASPGGFG GRGGRGDSPG FGGRGRGDFS GFGGRGRGDF SGGRGGRGRG FGGRGRSDRF VSDGRGRYDN RRGFGDKGRD RSYSRSPDRV
1201: RARGYDRRSD SRSISRSRSR SRSWSRSRSR SRSWSRSSSR SHSRSRSRDH GAAPERRPRA RSGFDVLPPA TGAAGPAPVP VPGPAAPPVP APAPEQSLAN
1301: TSSMSPMSPG GLVQPAAAPA GGQPSQGTGA AFPSSPAGET FPGAAAQHPA PDV
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.