Factsheet for Zm00001d039452_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31614	Sorghum	cytosol	87.34	98.17
Os01t0197200-01	Rice	plasma membrane	85.53	95.75
TraesCS3D01G106000.1	Wheat	cytosol	82.46	91.94
TraesCS3A01G103700.1	Wheat	cytosol	82.46	91.94
TraesCS3B01G121100.1	Wheat	cytosol	81.01	91.8
GSMUA_Achr10P...	Banana	cytosol	77.22	85.92
Solyc12g044860.1.1	Tomato	nucleus	73.6	84.97
PGSC0003DMT400083878	Potato	cytosol	75.95	83.83
VIT_09s0002g02100.t01	Wine grape	cytosol	76.85	82.52
KRH44155	Soybean	cytosol	75.59	82.45
KRH47127	Soybean	nucleus	75.59	82.45
CDY10596	Canola	nucleus	73.6	81.56
Bra030884.1-P	Field mustard	nucleus	73.42	81.36
CDY02459	Canola	cytosol	73.42	81.36
HORVU3Hr1G018850.7	Barley	cytosol	80.47	81.35
KRH48684	Soybean	cytosol, endoplasmic reticulum	64.92	75.42
AT1G55150.2	Thale cress	cytosol	70.89	74.52
Zm00001d042416_P002	Maize	extracellular, plasma membrane	61.3	53.13
Zm00001d019449_P004	Maize	nucleus	35.26	38.39
Zm00001d008725_P003	Maize	cytosol	42.86	34.2
Zm00001d039673_P002	Maize	cytosol	43.04	33.95
Zm00001d011155_P012	Maize	nucleus	44.12	31.16
Zm00001d036897_P001	Maize	extracellular	34.36	30.94
Zm00001d044510_P002	Maize	mitochondrion	44.67	30.8
Zm00001d048924_P001	Maize	plasma membrane	32.73	29.77
Zm00001d047502_P001	Maize	extracellular	31.83	28.48
Zm00001d028898_P011	Maize	cytosol	39.42	28.31
Zm00001d007755_P001	Maize	plastid	33.09	28.28
Zm00001d047633_P002	Maize	nucleus	39.24	28.26
Zm00001d007757_P004	Maize	plastid	32.91	27.49
Zm00001d033704_P007	Maize	extracellular	32.73	24.53
Zm00001d013453_P001	Maize	nucleus	32.37	24.39
Zm00001d024533_P001	Maize	nucleus	37.43	19.44
Zm00001d007719_P010	Maize	cytosol	42.13	17.22
Zm00001d048632_P001	Maize	cytosol	42.68	17.08

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	UniProt:A0A1D6MHG8	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:ONM28886.1
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000844F811	EnsemblPlantsGene:Zm00001d039452	EnsemblPlants:Zm00001d039452_P002	EnsemblPlants:Zm00001d039452_T002
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 20

Coordinates

chr3:+:4737374..4743944

Molecular Weight (calculated)

61295.6 Da

IEP (calculated)

6.971

GRAVY (calculated)

-0.428

Length

553 amino acids

Sequence
(BLAST)

001: MSRYDGRAAD AGSYRDRRSE GAFGGGSRAF SAPSKADASA AASELDGLPR FEKNFYVESP AVAGMTEEEV EAYRRRREIT VDGRDVPKPV REFRDVGFPG
101: NDFETAVAFG NYTSKQDNTV SDSLGKQDNT NKEEQRSQDF VFVHNWGLQL WMLTVVVSEY VLQEITKAGF VEPTPIQSQG WPMALRGRDL IGIAETGSGK
201: TLAYLLPAIV HVNAQPILSP GDGPIVLVLA PTRELAVQIQ QEATKFGASS KIKSTCIYGG VPKGPQVRDL QKGVEIVIAT PGRLIDMIES HHTNLRRVTY
301: LVLDEADRML DMGFEPQIKK IVSQIRPDRQ TLYWSATWPK EVEQLARNFL FDPYKVTIGS EDLKANHAIV QHVEILSESQ KYNKLVNLLE DIMDGSRILI
401: FMDTKKGCDQ TTRQLRMDGW PALSIHGDKS QAERDWVLSE FKSGKSPIMT ATDVAARGLD VKDVKYVINY DFPGSLEDYV HRIGRTGRAG AKGTAYTFFT
501: AANARFAKEL INILEEAGQK VSSELAAMGR GAPPPSSGYR DRYRGYGGGR SWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.