Factsheet for Solyc12g044860.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400083878	Potato	cytosol	98.96	94.61
GSMUA_Achr10P...	Banana	cytosol	86.43	83.3
Os01t0197200-01	Rice	plasma membrane	85.18	82.59
KXG31614	Sorghum	cytosol	84.13	81.91
VIT_09s0002g02100.t01	Wine grape	cytosol	87.68	81.55
Bra030884.1-P	Field mustard	nucleus	84.34	80.96
CDY02459	Canola	cytosol	84.34	80.96
CDY10596	Canola	nucleus	84.34	80.96
KRH47127	Soybean	nucleus	85.59	80.87
KRH44155	Soybean	cytosol	85.39	80.67
TraesCS3A01G103700.1	Wheat	cytosol	83.51	80.65
TraesCS3D01G106000.1	Wheat	cytosol	83.3	80.44
TraesCS3B01G121100.1	Wheat	cytosol	81.42	79.92
AT1G55150.2	Thale cress	cytosol	81.84	74.52
KRH48684	Soybean	cytosol, endoplasmic reticulum	73.28	73.74
Zm00001d039452_P002	Maize	cytosol	84.97	73.6
HORVU3Hr1G018850.7	Barley	cytosol	79.96	70.02
Solyc03g112350.2.1	Tomato	nucleus	69.73	51.31
Solyc12g035130.1.1	Tomato	nucleus	47.81	37.42
Solyc08g076200.2.1	Tomato	nucleus	38.62	33.45
Solyc02g086660.2.1	Tomato	nucleus	48.23	32.72
Solyc09g015930.2.1	Tomato	plastid	36.95	31.72
Solyc01g005960.2.1	Tomato	plastid	38.41	30.46
Solyc03g052980.2.1	Tomato	nucleus	37.37	29.25
Solyc03g117440.2.1	Tomato	cytosol, nucleus	35.07	28.24
Solyc06g068280.2.1	Tomato	extracellular, nucleus	35.07	28.24
Solyc01g079330.2.1	Tomato	nucleus	43.84	27.13
Solyc02g068190.1.1	Tomato	cytosol, nucleus	33.61	24.32
Solyc02g081290.2.1	Tomato	nucleus	29.85	21.9
Solyc01g057760.2.1	Tomato	nucleus	48.23	18.92
Solyc12g098700.1.1	Tomato	nucleus	42.59	17.79

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K4DFH1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	EnsemblPlantsGene:Solyc12g044860.1	EnsemblPlants:Solyc12g044860.1.1	UniParc:UPI0002769878	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 20 [Source:Projected from Arabidopsis thaliana (AT1G55150) UniProtKB/Swiss-Prot;Acc:Q9C718]

Coordinates

chr12:+:37669367..37676235

Molecular Weight (calculated)

53291.4 Da

IEP (calculated)

9.049

GRAVY (calculated)

-0.529

Length

479 amino acids

Sequence
(BLAST)

001: MSRYDSRPAD PGSYRDRRSD SVFGGGSNYR SSSSSRRDSE GKESPRKVNL DDLPPFEKNF YVESPSIAAM TEGEVEEYRR RREITIEGRD VPKPIKSFHD
101: VGFPDYVLQE IEKAGFTEPT PIQAQGWPMA LKGRDLIGIA ETGSGKTIAY LLPAIVHVNA QPILDHGDGP IVLVLAPTRE LAVQIQQEAT KFGASSRIKN
201: TCIYGGVPKG PQVRDLQKGV EIVIATPGRL IDMLESNHTN LRRVTYLVLD EADRMLDMGF EPQIRKIVSQ IRPDRQTLYW SATWPDLKAN HAIRQHVEIV
301: SESQKYNKLV KLLEDIMDGS RILIFMDTKK GCDQVTRQLR MDGWPALSIH GDKSQAERDW VLSEFKAGKS PIMTATDVAA RGLDVKDVKF VINYDFPGSL
401: EDYVHRIGRT GRAGASGTAY TFFTAANARF AKDLVNILEE AGQKVSPELA KMGRGAPPPP GHGGFRDRGR GYGGNKQWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.