Factsheet for Solyc03g112350.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046821	Potato	cytosol	96.47	87.47
GSMUA_Achr8P01340_001	Banana	cytosol	49.46	84.07
KRH03228	Soybean	nucleus	70.81	76.58
KRH57127	Soybean	endoplasmic reticulum, nucleus	71.58	76.14
AT5G63120.2	Thale cress	cytosol	66.05	72.76
Bra035857.1-P	Field mustard	cytosol	65.75	72.42
CDY16735	Canola	cytosol	65.75	72.42
CDY48128	Canola	cytosol	65.9	72.22
TraesCS3D01G412400.2	Wheat	cytosol	63.75	72.17
EES04084	Sorghum	cytosol	63.9	71.97
TraesCS3B01G451900.1	Wheat	cytosol	63.44	71.95
TraesCS3A01G416900.1	Wheat	cytosol	63.44	71.95
HORVU3Hr1G092600.1	Barley	cytosol	63.13	71.6
HORVU3Hr1G092610.1	Barley	cytosol	63.13	71.6
Solyc12g044860.1.1	Tomato	nucleus	51.31	69.73
Zm00001d042416_P002	Maize	extracellular, plasma membrane	63.75	65.05
VIT_17s0000g09130.t01	Wine grape	cytosol	60.83	64.81
Solyc12g035130.1.1	Tomato	nucleus	36.1	38.4
Solyc08g076200.2.1	Tomato	nucleus	29.8	35.08
Solyc02g086660.2.1	Tomato	nucleus	37.63	34.7
Solyc01g005960.2.1	Tomato	plastid	30.57	32.95
Solyc03g052980.2.1	Tomato	nucleus	30.57	32.52
Solyc09g015930.2.1	Tomato	plastid	27.8	32.44
Solyc01g079330.2.1	Tomato	nucleus	35.33	29.72
Solyc03g117440.2.1	Tomato	cytosol, nucleus	26.57	29.08
Solyc06g068280.2.1	Tomato	extracellular, nucleus	26.27	28.74
Solyc02g068190.1.1	Tomato	cytosol, nucleus	27.04	26.59
Solyc02g081290.2.1	Tomato	nucleus	23.81	23.74
Solyc01g057760.2.1	Tomato	nucleus	38.4	20.48
Solyc12g098700.1.1	Tomato	nucleus	33.18	18.83

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
UniProt:K4BK89	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g112350.2	EnsemblPlants:Solyc03g112350.2.1	UniParc:UPI00027674BB
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:62774447..62783199

Molecular Weight (calculated)

70298.8 Da

IEP (calculated)

10.252

GRAVY (calculated)

-0.492

Length

651 amino acids

Sequence
(BLAST)

001: MSYPNYDSRY GDSGSYRQRR SDLMGPQPSM YPRPMPGGGA ASYGRGGPLP YGGPQAGGPP PMDGGSRGGM GGSGRVGGGY QPFEGGFARG SDMGRFGGGG
101: VDRVANGGMG ERPGRFGAGA SYSGGRSGGG GGRGGRGFDG GYSGGRGGGR FSSDGGRGSS GGRGGRHGRS RDDLDNLTLP KQDFGNLVPF EKNFYVENHA
201: VRAMTDQEVA HYRARRDITI EGQDVPRPIQ MFHEANFPDY CLEVISRLGF VEPTPIQSQG WPMALKGRDL IGIAETGSGK TLAYLLPALV HVSAQPRLAQ
301: GDGPIVLVLA PTRELAVQIQ EEAVKFGSRA NIRSTCIYGG APKGPQIRDL RRGVEIVIAT PGRLIDMLEA QHTNLKRVTY LVLDEADRML DMGFEPQIRK
401: LISQIRPDRQ TLYWSATWPR EVEALARQFL RNPYKVIIGS PELKANQSIR QVIEVVTDLE KYSRLIGLLK EVMDGSRILI FVETKKGCDQ VTRQLRMDGW
501: PALSIHGDKS QDERDWVLAD FKSGRSPIMI ATDVAARGLD VKDIKCVINY DFPSSLEDYI HRIGRTGRAG ATGTAFTFFT HANAKFTREL IKILQQAGQI
601: VPPQLSALAR SSGPSTGGSN FRSRGRGGFG NRGGQRSGSN VIPIGGSRRP W

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.