Factsheet for GSMUA_Achr8P01340_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	cytosol	74.93	57.75
EES04084	Sorghum	cytosol	81.98	54.33
KRH03228	Soybean	nucleus	85.38	54.32
AT5G63120.2	Thale cress	cytosol	81.46	52.79
KRH57127	Soybean	endoplasmic reticulum, nucleus	84.07	52.61
TraesCS3A01G416900.1	Wheat	cytosol	78.59	52.44
HORVU3Hr1G092610.1	Barley	cytosol	78.59	52.44
HORVU3Hr1G092600.1	Barley	cytosol	78.59	52.44
TraesCS3B01G451900.1	Wheat	cytosol	78.33	52.26
TraesCS3D01G412400.2	Wheat	cytosol	78.33	52.17
Bra035857.1-P	Field mustard	cytosol	79.9	51.78
CDY16735	Canola	cytosol	79.9	51.78
CDY48128	Canola	cytosol	80.16	51.68
Solyc03g112350.2.1	Tomato	nucleus	84.07	49.46
Zm00001d042416_P002	Maize	extracellular, plasma membrane	81.98	49.22
PGSC0003DMT400046821	Potato	cytosol	81.2	43.31
VIT_17s0000g09130.t01	Wine grape	cytosol	64.23	40.26
GSMUA_Achr9P25390_001	Banana	mitochondrion	36.81	31.47
GSMUA_Achr11P...	Banana	nucleus	46.21	30.68
GSMUA_Achr8P15350_001	Banana	plastid	45.43	29.34
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	45.69	28.88
GSMUA_Achr6P29700_001	Banana	plastid	43.08	28.55
GSMUA_Achr8P31890_001	Banana	nucleus	52.74	25.7
GSMUA_Achr1P13000_001	Banana	cytosol	46.48	25.65
GSMUA_Achr1P24870_001	Banana	cytosol	44.13	25.49
GSMUA_Achr1P13820_001	Banana	mitochondrion	35.51	25.09
GSMUA_Achr2P09160_001	Banana	cytosol	35.77	25.05
GSMUA_Achr4P17320_001	Banana	plastid	31.07	23.33
GSMUA_Achr5P06030_001	Banana	nucleus	43.34	23.09
GSMUA_Achr3P01410_001	Banana	nucleus	30.29	22.01
GSMUA_Achr1P15980_001	Banana	cytosol	53.52	19.41
GSMUA_Achr10P...	Banana	cytosol	41.51	15.88

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr8G01340_001	EnsemblPlants:GSMUA_Achr8P01340_001	EnsemblPlants:GSMUA_Achr8T01340_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	UniProt:M0TLN6	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000296CA7C	SEG:seg	:

Description

DEAD-box ATP-dependent RNA helicase 30 [Source:GMGC_GENE;Acc:GSMUA_Achr8G01340_001]

Coordinates

chr8:+:1118682..1123131

Molecular Weight (calculated)

42259.4 Da

IEP (calculated)

10.172

GRAVY (calculated)

-0.181

Length

383 amino acids

Sequence
(BLAST)

001: MALKGRDMVG IAETGSGKTL AYLLPALVHV NAQPRLAYGE GPIVLVLAPT RELAVQIQEE SLKFGLHSIV RSTCIYGGAP KGPQIRDLKK GVEIVIATPG
101: RLIDMLEACH TNLRRVTYLV LDEADRMLDM GFEPQIRKIV SQIRPDRQTL YWSATWPREV EALARQFLQN PYKIIIGSTD LKANQSIMQI VEVISELEKY
201: PRLIKLLGEV MDGSRILIFL ETKKGCDQVT RQLRMDGWPA LSIHGDKAQS ERDWVLAEFK SGRSPIMTAT DVAARGLDVK DIKCVVNFDF PTSLEDYVHR
301: IGRTGRAGAK GTAFTFFTQA NIRFARELVK ILQDAGQNVS PALASMARSG GGSGGNFRSR GRGNGNRSIS GSNTIPLGGR RPW

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.