Factsheet for GSMUA_Achr1P13820_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
nucleus 1
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0150100-02	Rice	cytosol	67.34	79.35
GSMUA_Achr2P09160_001	Banana	cytosol	72.69	72.03
VIT_09s0002g08120.t01	Wine grape	cytosol	72.51	66.95
CDY38671	Canola	cytosol	64.02	66.86
CDX87315	Canola	cytosol	63.65	66.6
CDY61276	Canola	cytosol	63.65	66.47
CDY39973	Canola	cytosol	63.47	66.41
KRH68534	Soybean	cytosol	71.4	65.93
KRG94409	Soybean	cytosol	71.4	65.82
PGSC0003DMT400036663	Potato	cytosol	70.85	65.2
Solyc03g117440.2.1	Tomato	cytosol, nucleus	71.03	64.71
AT4G33370.1	Thale cress	cytosol	64.39	64.39
CDX67949	Canola	cytosol	64.58	64.34
PGSC0003DMT400073340	Potato	cytosol	69.74	64.18
Solyc06g068280.2.1	Tomato	extracellular, nucleus	69.93	63.7
HORVU5Hr1G048040.1	Barley	plastid	67.16	63.64
AT5G51280.1	Thale cress	cytosol	68.82	63.11
Bra018133.1-P	Field mustard	cytosol	68.45	63.1
Bra008471.1-P	Field mustard	cytosol	64.94	62.52
Bra035177.1-P	Field mustard	cytosol	67.34	62.07
TraesCS3B01G141300.1	Wheat	cytosol	68.45	60.42
TraesCS5B01G152200.1	Wheat	cytosol	67.71	60.26
Bra003568.1-P	Field mustard	cytosol	65.68	60.24
EER92293	Sorghum	cytosol	68.45	60.03
Zm00001d047502_P001	Maize	extracellular	67.9	59.55
TraesCS5D01G159000.1	Wheat	cytosol	66.79	59.54
TraesCS5A01G153700.1	Wheat	cytosol	64.02	59.52
HORVU3Hr1G022710.1	Barley	mitochondrion	68.45	58.15
Os06t0697200-00	Rice	cytosol	65.13	57.03
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	68.45	56.38
CDX79384	Canola	cytosol	33.76	46.92
GSMUA_Achr8P01340_001	Banana	cytosol	25.09	35.51
GSMUA_Achr10P...	Banana	cytosol	28.23	30.78
GSMUA_Achr8P15350_001	Banana	plastid	29.34	26.81
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	28.97	25.91
GSMUA_Achr9P25390_001	Banana	mitochondrion	21.03	25.45
GSMUA_Achr6P29700_001	Banana	plastid	26.2	24.57
GSMUA_Achr1P24870_001	Banana	cytosol	29.7	24.28
GSMUA_Achr1P13000_001	Banana	cytosol	30.63	23.92
GSMUA_Achr11P...	Banana	nucleus	25.09	23.57
GSMUA_Achr3P01410_001	Banana	nucleus	20.85	21.44
GSMUA_Achr4P17320_001	Banana	plastid	19.37	20.59
GSMUA_Achr5P06030_001	Banana	nucleus	25.83	19.47
GSMUA_Achr8P31890_001	Banana	nucleus	27.12	18.7
GSMUA_Achr1P15980_001	Banana	cytosol	28.6	14.68
GSMUA_Achr10P...	Banana	cytosol	25.28	13.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr1G13820_001	EnsemblPlants:GSMUA_Achr1P13820_001
EnsemblPlants:GSMUA_Achr1T13820_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
UniProt:M0RZP0	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158
PFscan:PS51192	PANTHER:PTHR24031	PANTHER:PTHR24031:SF20	SMART:SM00343	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0002956A77	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G13820_001]

Coordinates

chr1:-:10537170..10544177

Molecular Weight (calculated)

60854.4 Da

IEP (calculated)

9.914

GRAVY (calculated)

-0.293

Length

542 amino acids

Sequence
(BLAST)

001: MYIHNLLFGP QFYFRPLITH LRPPLETLSS WSQHRWLPPT RHRNPFLRPP PTLTTMMTTR ITSPSISAVP WRPRRSSSAR AALHPPAMPT RTKPTTRRPP
101: PRPSRKLKEK GIVQPTPIQV QGLPVILSGR DMIGIAFTGS GKTLVFVLPL IMTAMQEEIM MPIVPGEGPF GLVVCPSREL ARQTYEVVEQ FLAPLREHGC
201: PELRPLLCIG GVDMRSQLEV VKKGVHIVVA TPGRLKDLLA KKKMNLDNCR YLTLDEADRL VDLGFEDDIR EVFDHFKAQR QTLLFSATMP KKIQNFAKSA
301: LVKPVTVNVG RAGAANLDVI QEVEYVKQEA KIVYLLECLQ KTPPPDQEER EYAIASFKSG KKDVLVATDV ASKGLDFPDI QHVINYDMPA EIENYVHRIG
401: RTGRCGKTGI ATTFINKNQT ETTLLDLKHL LQEAKQRIPP VLAELNDPME DGDALTSASG VKGCAYCGGL GHRIRDCPKL EHQKSMAIAG SRRDYFEKKK
501: RGTLYWIILQ APVGYSFFPC PYLVRSATDF NHGHRVSPNL QP

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.