Factsheet for PGSC0003DMT400073340

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g068280.2.1	Tomato	extracellular, nucleus	98.81	97.82
PGSC0003DMT400036663	Potato	cytosol	91.17	91.17
KRH68534	Soybean	cytosol	88.45	88.76
VIT_09s0002g08120.t01	Wine grape	cytosol	88.45	88.76
KRG94409	Soybean	cytosol	88.29	88.44
CDY61276	Canola	cytosol	76.4	86.71
CDY38671	Canola	cytosol	76.4	86.71
CDY39973	Canola	cytosol	76.23	86.68
CDX87315	Canola	cytosol	75.89	86.29
Os02t0150100-02	Rice	cytosol	67.06	85.87
Bra008471.1-P	Field mustard	cytosol	80.31	84.01
Bra018133.1-P	Field mustard	cytosol	83.7	83.84
AT5G51280.1	Thale cress	cytosol	84.04	83.76
Bra035177.1-P	Field mustard	cytosol	82.85	82.99
GSMUA_Achr2P09160_001	Banana	cytosol	76.06	81.9
CDX67949	Canola	cytosol	75.55	81.8
AT4G33370.1	Thale cress	cytosol	73.51	79.89
Bra003568.1-P	Field mustard	cytosol	79.63	79.36
TraesCS3B01G141300.1	Wheat	cytosol	77.59	74.43
HORVU5Hr1G048040.1	Barley	plastid	71.99	74.13
Zm00001d047502_P001	Maize	extracellular	77.59	73.95
EER92293	Sorghum	cytosol	77.42	73.79
CDX79384	Canola	cytosol	47.71	72.05
TraesCS5D01G159000.1	Wheat	cytosol	74.36	72.04
TraesCS5B01G152200.1	Wheat	cytosol	74.02	71.59
Os06t0697200-00	Rice	cytosol	74.87	71.24
TraesCS5A01G153700.1	Wheat	cytosol	70.46	71.18
HORVU3Hr1G022710.1	Barley	mitochondrion	76.91	71.0
GSMUA_Achr1P13820_001	Banana	mitochondrion	64.18	69.74
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	77.42	69.3
PGSC0003DMT400083878	Potato	cytosol	29.37	34.53
PGSC0003DMT400010921	Potato	cytosol	29.71	29.07
PGSC0003DMT400081851	Potato	cytosol	29.71	28.97
PGSC0003DMT400024026	Potato	nucleus	26.66	28.19
PGSC0003DMT400002828	Potato	cytosol	29.54	28.16
PGSC0003DMT400080614	Potato	nucleus	27.33	26.26
PGSC0003DMT400023277	Potato	cytosol	34.13	25.97
PGSC0003DMT400024330	Potato	cytosol	28.52	25.11
PGSC0003DMT400043101	Potato	nucleus	29.37	24.47
PGSC0003DMT400046821	Potato	cytosol	28.35	23.26
PGSC0003DMT400001391	Potato	cytosol	28.69	23.15
PGSC0003DMT400011665	Potato	nucleus	33.45	17.67
PGSC0003DMT400071932	Potato	cytosol	3.23	17.12

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1CRV4	InterPro:P-loop_NTPase
PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400028504	PGSC:PGSC0003DMG400028504	EnsemblPlants:PGSC0003DMT400073340
PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
UniParc:UPI000296A1D0	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

DEAD-box protein abstrakt [Source:PGSC_GENE;Acc:PGSC0003DMG400028504]

Coordinates

chr6:-:49887148..49890842

Molecular Weight (calculated)

66154.5 Da

IEP (calculated)

6.394

GRAVY (calculated)

-0.269

Length

589 amino acids

Sequence
(BLAST)

001: MEIEEEDDYV EYVPVTKRRA IEAQKILQRK GKSEAFEEEE EKIKLVEVKP SLLVKASQLK KEQPEISHAE QVFQQEKEMI EHLSDKKTLM SVRELAKGIT
101: YTEPLCTGWK PPLAIRRNSK KACDAIRKQW HIIVEGDDVT PPIKNFKDMR FPEPILKKLR AKGIIQPTPI QVQGLPVILS GRDMIGIAFT GSGKTLVFVL
201: PLIMVALQEE ILMPIAPGEG PFGLIICPSR ELARQTYEVI EQFIEPLMES GYPELRPLLC IGGVDMKSQV DVVKRGVHIV VATPGRLKDL LAKKKMNLDN
301: CRFLTLDEAD RLVDLGFEDD IREVFDHFKA QRQTLLFSAT MPTKIQNFAR NALVKPVIVN VGRAGAANLD VIQEVEYVKQ EAKIVYLLEC LQKTPPPVLI
401: FCENKADVDD IHEYLLLKGV EAVAVHGGKD QEEREYAIAA FKACKKDVLV ATDVASKGLD FPDIQHVINY DMPAEIENYV HRIGRTGRCG KTGIATTFIN
501: KNQSETTLLD LKHLLQEAKQ RIPPVLAELN DPMDDVDAIT DASGVKGCAY CGGLGHRIRD CPKLDHQRSQ QIANSRRDYF GSGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.