Factsheet for PGSC0003DMT400081851

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 4
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g005960.2.1	Tomato	plastid	97.85	97.85
PGSC0003DMT400010921	Potato	cytosol	87.91	88.21
VIT_06s0004g00850.t01	Wine grape	cytosol	50.17	79.32
KRG97325	Soybean	endoplasmic reticulum	76.82	78.51
KRH58901	Soybean	nucleus	79.8	78.5
KRH42811	Soybean	endoplasmic reticulum	79.3	77.38
KRH31589	Soybean	nucleus	75.5	75.5
PGSC0003DMT400002828	Potato	cytosol	76.99	75.24
Os11t0599500-00	Rice	nucleus, plasma membrane	73.51	71.27
Zm00001d048924_P001	Maize	plasma membrane	70.86	70.39
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.87	70.22
TraesCS4D01G148700.1	Wheat	golgi	69.87	70.22
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.87	70.22
KXG28851	Sorghum	cytosol, plastid	70.53	68.16
TraesCS4A01G141400.1	Wheat	plastid	69.37	63.87
PGSC0003DMT400083878	Potato	cytosol	32.28	38.92
PGSC0003DMT400080614	Potato	nucleus	33.28	32.79
PGSC0003DMT400024026	Potato	nucleus	28.81	31.24
PGSC0003DMT400073340	Potato	cytosol	28.97	29.71
PGSC0003DMT400036663	Potato	cytosol	28.81	29.54
PGSC0003DMT400001391	Potato	cytosol	34.6	28.63
PGSC0003DMT400046821	Potato	cytosol	31.95	26.88
PGSC0003DMT400043101	Potato	nucleus	31.13	26.59
PGSC0003DMT400024330	Potato	cytosol	29.3	26.46
PGSC0003DMT400023277	Potato	cytosol	32.28	25.19
PGSC0003DMT400071932	Potato	cytosol	4.47	24.32
PGSC0003DMT400011665	Potato	nucleus	32.78	17.76

Protein Annotations

EntrezGene:102604430	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M1D553	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400032137	PGSC:PGSC0003DMG400032137	EnsemblPlants:PGSC0003DMT400081851	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI000294F792	RefSeq:XP_006354152.1	RefSeq:XP_006354153.1	SEG:seg	:	:

Description

Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400032137]

Coordinates

chr1:+:1486493..1493275

Molecular Weight (calculated)

65698.3 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.443

Length

604 amino acids

Sequence
(BLAST)

001: MSMSWADSVS AAENPAGAPS KSAYVPPHLR NRPSTDPPAQ ASYAGAAASL GNDHSGYGVP NVVGSRWSGQ RNEYQSGYAG GGGRGGGWNG KSGGWDRGRD
101: REVNPFTNDD SEPVSELESS AINFDAYEDI PVETSGDNVP PPVNTFADID LGEAVNENIR RCKYVRPTPV QRHAIPISLA GRDLMACAQT GSGKTAAFCF
201: PIISGIMRGQ FPRPPRPRMA FPLALILSPT RELSCQIHDE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVHILVATPG RLVDLLERAR VSLQMIRYLA
301: LDEADRMLDM GFEPQIRKIV QQMDMPPPGV RQTMLFSATF PKEIQRLASD FLSTYIFLAV GRVGSSTDLI VQRVEYVQET DKRSHLMDLL HAQKENGVHG
401: KQSLTLVFVE TKKGADALEH WLCMNGFPAT AIHGDRTQQE REHALRSFKT GHTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGKTG
501: LATAFFNENN SSLARSLSDL MQEANQEVPA WLSRFAARST YGGKNRRGGA RFGARDFRRD SSYNRGASGG ATDYYGGGAN MNSGYPSGGY NASYGTAGVT
601: SAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.