Factsheet for PGSC0003DMT400002828

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 3
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g052980.2.1	Tomato	nucleus	97.9	98.86
CDY47978	Canola	plastid	55.66	82.3
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	79.29	78.78
PGSC0003DMT400010921	Potato	cytosol	75.73	77.74
PGSC0003DMT400081851	Potato	cytosol	75.24	76.99
CDY06034	Canola	cytosol	70.06	75.3
CDY14843	Canola	cytosol, plastid	74.43	75.16
Bra016869.1-P	Field mustard	cytosol, plastid	73.95	75.04
CDX71948	Canola	cytosol	72.17	74.71
CDX98304	Canola	cytosol, plastid	55.34	74.19
KRH38030	Soybean	endoplasmic reticulum	72.98	73.81
Bra007399.1-P	Field mustard	cytosol	72.49	73.32
AT2G42520.2	Thale cress	nucleus, plastid	75.08	73.3
CDX98301	Canola	cytosol	71.04	73.04
KRH71800	Soybean	plastid	72.17	73.0
CDX67749	Canola	cytosol	71.04	72.92
Bra003341.1-P	Field mustard	cytosol	71.84	72.79
AT3G58510.2	Thale cress	cytosol	71.84	72.55
Os11t0599500-00	Rice	nucleus, plasma membrane	72.33	71.75
TraesCS4D01G148700.1	Wheat	golgi	68.93	70.88
TraesCS4B01G126000.1	Wheat	cytosol, plastid	68.93	70.88
HORVU4Hr1G031280.1	Barley	cytosol, plastid	68.45	70.38
Zm00001d048924_P001	Maize	plasma membrane	69.09	70.23
CDX67752	Canola	cytosol	71.68	69.98
CDY49232	Canola	cytosol	69.74	68.96
Bra003343.1-P	Field mustard	cytosol	71.52	68.74
AT3G58570.1	Thale cress	cytosol	71.84	68.73
KXG28851	Sorghum	cytosol, plastid	69.42	68.64
CDX71944	Canola	cytosol	70.06	68.3
Bra007402.1-P	Field mustard	cytosol	69.9	67.29
TraesCS4A01G141400.1	Wheat	plastid	68.77	64.79
Bra014568.1-P	Field mustard	cytosol	56.8	52.7
CDX88990	Canola	cytosol, plastid	43.53	48.21
CDY00570	Canola	nucleus	37.22	37.89
PGSC0003DMT400083878	Potato	cytosol	30.26	37.33
PGSC0003DMT400080614	Potato	nucleus	32.52	32.79
PGSC0003DMT400024026	Potato	nucleus	28.16	31.24
PGSC0003DMT400036663	Potato	cytosol	28.8	30.22
PGSC0003DMT400073340	Potato	cytosol	28.16	29.54
PGSC0003DMT400001391	Potato	cytosol	33.5	28.36
PGSC0003DMT400043101	Potato	nucleus	31.07	27.16
PGSC0003DMT400046821	Potato	cytosol	31.39	27.02
PGSC0003DMT400024330	Potato	cytosol	29.13	26.91
PGSC0003DMT400023277	Potato	cytosol	32.2	25.71
PGSC0003DMT400071932	Potato	cytosol	4.53	25.23
PGSC0003DMT400011665	Potato	nucleus	30.58	16.95

Protein Annotations

EntrezGene:102596159	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0ZKR0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
EnsemblPlantsGene:PGSC0003DMG400001104	PGSC:PGSC0003DMG400001104	EnsemblPlants:PGSC0003DMT400002828	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002966B2A	RefSeq:XP_006360604.1	RefSeq:XP_006360605.1	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 37 [Source:PGSC_GENE;Acc:PGSC0003DMG400001104]

Coordinates

chr3:-:14195006..14204658

Molecular Weight (calculated)

66721.5 Da

IEP (calculated)

7.223

GRAVY (calculated)

-0.495

Length

618 amino acids

Sequence
(BLAST)

001: MRNSWADSVE NVATDNGGPS GGSGASASTR RSSYVPPHLR NKPMTAEPLA PLHGGPPSGN DRSGFNGPTS GPRWGGSRPD YGRQGGYGGG GRGGGWGGRG
101: GGWGREREVN PFGNDADVDL EQSFDQENTG INFDAYEDIP VETSGENVPP PVNTFAEIDL GEAANLNIRR CKYVKPTPVQ RYAIPISLAG RDLMACAQTG
201: SGKTAAFCFP IISGIMRGDF PQRPHGSRTV FPLALILSPT RELSMQIHEE AKKFSYQTGV RVVVAYGGAP INQQLRELER GVDILVATPG RLVDLLERAK
301: VSLQMIRYLA LDEADRMLDM GFEPQIRRIV EQMDMPPPGE RQTMLFSATF PKEIQRLASD FLANYIFLAV GRVGSSTDLI VQRVEFVHDV DKRSHLMDLL
401: HAQMANGVHG KHNLTLVFVE TKKGADALEH WLCINGFPAT AIHGDRTQQE REQALRTFKR GDTPILVATD VAARGLDIPH VSHVINFDLP NDIDDYVHRI
501: GRTGRAGKTG LATAFFNDGN LSMAKPLADL MQEANQDVPE WLTRYASRSS FGGGRNRRAG GGRFGGRDFR RDSSYNRSGG GGGGGGGGGM NYYDGGNSSG
601: GYGNYSGGYG PGVTSAWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.