CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX71948	Canola	cytosol	97.74	94.14
Bra007399.1-P	Field mustard	cytosol	99.3	93.45
CDX67749	Canola	cytosol	90.61	86.54
CDX98301	Canola	cytosol	90.26	86.36
CDY47978	Canola	plastid	62.26	85.65
AT3G58510.2	Thale cress	cytosol	88.17	82.84
CDY14843	Canola	cytosol, plastid	83.83	78.76
CDX98304	Canola	cytosol, plastid	59.65	74.4
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	79.13	73.15
CDX67752	Canola	cytosol	78.61	71.41
CDY49232	Canola	cytosol	76.87	70.72
Solyc03g052980.2.1	Tomato	nucleus	75.13	70.59
PGSC0003DMT400002828	Potato	cytosol	75.3	70.06
CDX71944	Canola	cytosol	77.22	70.03
KRH38030	Soybean	endoplasmic reticulum	73.91	69.56
KRH71800	Soybean	plastid	72.52	68.25
TraesCS4B01G126000.1	Wheat	cytosol, plastid	71.3	68.22
TraesCS4D01G148700.1	Wheat	golgi	71.13	68.05
HORVU4Hr1G031280.1	Barley	cytosol, plastid	71.13	68.05
Zm00001d048924_P001	Maize	plasma membrane	70.78	66.94
Os11t0599500-00	Rice	nucleus, plasma membrane	71.83	66.29
KXG28851	Sorghum	cytosol, plastid	70.78	65.12
TraesCS4A01G141400.1	Wheat	plastid	71.3	62.5
CDX88990	Canola	cytosol, plastid	49.39	50.9
CDX84672	Canola	cytosol	30.26	38.93
CDY00570	Canola	nucleus	41.04	38.88
CDY02459	Canola	cytosol	30.96	35.67
CDY10596	Canola	nucleus	30.96	35.67
CDY16735	Canola	cytosol	34.78	33.84
CDY48128	Canola	cytosol	34.96	33.84
CDY41747	Canola	nucleus	30.96	32.96
CDY65864	Canola	nucleus	30.26	32.58
CDY66221	Canola	nucleus	30.09	32.28
CDY53786	Canola	nucleus	31.65	30.85
CDX87315	Canola	cytosol	27.65	30.7
CDY61276	Canola	cytosol	27.65	30.64
CDY39973	Canola	cytosol	27.48	30.5
CDX83333	Canola	nucleus	33.74	30.46
CDY38671	Canola	cytosol	27.48	30.44
CDY37696	Canola	nucleus	30.96	30.17
CDX67949	Canola	cytosol	28.17	29.78
CDX84112	Canola	nucleus	15.3	29.33
CDX91943	Canola	cytosol	33.57	29.02
CDY28671	Canola	cytosol	33.22	28.81
CDX91036	Canola	cytosol	33.57	28.22
CDX74304	Canola	cytosol	33.39	27.91
CDX80096	Canola	cytosol	34.61	27.34
CDX79541	Canola	nucleus	29.74	27.19
CDY37796	Canola	cytosol	34.61	27.11
CDX95719	Canola	cytosol	34.61	27.07
CDY72529	Canola	cytosol	28.0	25.84
CDX85591	Canola	cytosol	33.74	25.8
CDX79384	Canola	cytosol	15.48	22.82
CDX74101	Canola	cytosol	33.04	21.69
CDY08048	Canola	nucleus	33.04	21.59
CDY44720	Canola	nucleus	30.09	20.02
CDY41597	Canola	nucleus	24.87	18.5
CDY31513	Canola	nucleus	30.26	15.73
CDX91037	Canola	cytosol	3.13	10.29
CDX91039	Canola	cytosol	3.13	10.29

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EZM8	EnsemblPlants:CDY06034	ProteinID:CDY06034	ProteinID:CDY06034.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00121886001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EEC8E4	SEG:seg	:	:	:

Description

BnaA09g37460D

Coordinates

chrLK031967:-:404871..408107

Molecular Weight (calculated)

62733.9 Da

IEP (calculated)

6.916

GRAVY (calculated)

-0.501

Length

575 amino acids

Sequence
(BLAST)

001: MSTSWADVAD SDNAASRGKP AYVPPHLRNR QSEPAAPLPG NDRGGGYGGQ PSRWAPGGGG GGYRADAGRT GYGYGGRGTT GGGGGGWDRE VNPFGDDVDL
101: EPAFTEQENT GINFDAYEDI PIETSGGDVP PPVNTFAEID LGEALNLNIR RCKYVRPTPV QRHAIPILLA QRDLMACAQT GSGKTAAFCF PIISGILRDQ
201: NPQRPRGSRT VYPLAVILSP TRELASQIHD EAKKFSYQTG VKVVVAYGGT PINQQLRELE RGVDILVATP GRLNDLLERA RVSMQMIKFL ALDEADRMLD
301: MGFEPQIRKI VEEMDMPPRG MRQTMLFSAT FPREIQRLAA DFLANYIFLA VGRVGSSTDL IAQRVEFVHE SDKKSHLMDL LHAQRDTGNH DKQSLTLVFV
401: ETKRGADSLE NWLCMNDFPA TTIHGDRTQQ EREVALKSFK SGRTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKS GVATAFFNEK
501: NAQLARQLAE LMQEANQEVP EWLTRYASRA SFGGGKKRSG GRFGGRDFRR EGSYGGRGGG SGGGGNDYYV TSAWD

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.