Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08048 | Canola | nucleus | 98.97 | 98.52 |
| Bra001200.1-P | Field mustard | cytosol | 98.97 | 82.41 |
| AT3G06480.1 | Thale cress | cytosol | 87.56 | 70.5 |
| CDY28671 | Canola | cytosol | 38.58 | 50.98 |
| CDX91943 | Canola | cytosol | 38.36 | 50.53 |
| CDX91036 | Canola | cytosol | 38.81 | 49.71 |
| CDX74304 | Canola | cytosol | 38.47 | 48.98 |
| CDY10596 | Canola | nucleus | 25.91 | 45.49 |
| CDY02459 | Canola | cytosol | 25.68 | 45.09 |
| CDX85591 | Canola | cytosol | 38.7 | 45.08 |
| VIT_05s0020g00470.t01 | Wine grape | cytosol | 57.88 | 43.97 |
| KRH36905 | Soybean | nucleus | 56.96 | 42.83 |
| KRH11875 | Soybean | endoplasmic reticulum | 56.62 | 41.3 |
| CDY47978 | Canola | plastid | 19.41 | 40.67 |
| GSMUA_Achr1P15980_001 | Banana | cytosol | 48.63 | 40.34 |
| CDY16735 | Canola | cytosol | 27.05 | 40.1 |
| CDY48128 | Canola | cytosol | 27.17 | 40.07 |
| Solyc01g057760.2.1 | Tomato | nucleus | 55.25 | 39.64 |
| CDX98304 | Canola | cytosol, plastid | 19.41 | 36.88 |
| CDX84672 | Canola | cytosol | 18.04 | 35.35 |
| CDY41747 | Canola | nucleus | 21.23 | 34.44 |
| CDY65864 | Canola | nucleus | 20.89 | 34.27 |
| CDY66221 | Canola | nucleus | 20.89 | 34.14 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 51.26 | 33.91 |
| TraesCS3A01G100200.1 | Wheat | cytosol | 51.37 | 33.73 |
| CDX71948 | Canola | cytosol | 22.6 | 33.17 |
| CDY06034 | Canola | cytosol | 21.69 | 33.04 |
| OQU84042 | Sorghum | cytosol | 52.28 | 33.0 |
| Zm00001d007719_P010 | Maize | cytosol | 50.91 | 32.96 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 50.68 | 32.96 |
| Zm00001d048632_P001 | Maize | cytosol | 51.94 | 32.92 |
| CDX67749 | Canola | cytosol | 22.37 | 32.56 |
| HORVU3Hr1G018170.3 | Barley | cytosol | 50.68 | 32.13 |
| CDX98301 | Canola | cytosol | 22.03 | 32.11 |
| CDY14843 | Canola | cytosol, plastid | 22.15 | 31.7 |
| CDY49232 | Canola | cytosol | 22.49 | 31.52 |
| CDX67752 | Canola | cytosol | 22.37 | 30.96 |
| CDX71944 | Canola | cytosol | 22.37 | 30.91 |
| CDX87315 | Canola | cytosol | 18.15 | 30.7 |
| CDY38671 | Canola | cytosol | 18.15 | 30.64 |
| CDY61276 | Canola | cytosol | 18.15 | 30.64 |
| CDX67949 | Canola | cytosol | 18.95 | 30.51 |
| CDY39973 | Canola | cytosol | 17.92 | 30.31 |
| CDX83333 | Canola | nucleus | 20.55 | 28.26 |
| CDX84112 | Canola | nucleus | 9.47 | 27.67 |
| CDY72529 | Canola | cytosol | 19.18 | 26.97 |
| CDY53786 | Canola | nucleus | 17.92 | 26.61 |
| CDY37696 | Canola | nucleus | 17.92 | 26.61 |
| CDY37796 | Canola | cytosol | 22.03 | 26.29 |
| CDX80096 | Canola | cytosol | 21.58 | 25.96 |
| CDX95719 | Canola | cytosol | 21.69 | 25.85 |
| CDX88990 | Canola | cytosol, plastid | 16.44 | 25.81 |
| CDX79541 | Canola | nucleus | 17.35 | 24.17 |
| CDX79384 | Canola | cytosol | 10.39 | 23.33 |
| CDY44720 | Canola | nucleus | 21.23 | 21.53 |
| CDY41597 | Canola | nucleus | 18.38 | 20.83 |
| CDY00570 | Canola | nucleus | 12.56 | 18.12 |
| CDY31513 | Canola | nucleus | 21.0 | 16.64 |
| CDX91039 | Canola | cytosol | 2.51 | 12.57 |
| CDX91037 | Canola | cytosol | 2.51 | 12.57 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078CAJ6 | EnsemblPlants:CDX74101 | ProteinID:CDX74101 | ProteinID:CDX74101.1 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:GSBRNA2T00111856001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EF3B16 | SEG:seg | : | : |
Description
BnaA03g29460D
Coordinates
chrLK031800:+:1325120..1328671
Molecular Weight (calculated)
96386.4 Da
IEP (calculated)
10.572
GRAVY (calculated)
-0.785
Length
876 amino acids
Sequence
(BLAST)
(BLAST)
001: MPQQLSHQYP HSQQQYMGYR PYMQPQGNQN SHQMGPQGQQ FPSQQEYNSM PPKREGEEFH RGEKTGFSQP HLQNSEASPS QNTAFEAKAS SQRPNATQQY
101: NGPQGSFQHP AAVTQFQQPG ANLAHQQLGP RPPHHMDQML HQKSHASPFR SNNTYENNLQ ARPGNDSYGN TRMEGPMRGA QPRHPAAMPE DIRIGGGPPA
201: HADPAMGQTG HGPYGHAGPA FPTAGRPHFA TTPDGPHLSP VDSYRKQHEI TVTGENIPAP FITFESSGLP PELLRELLSA GFPSPTPIQA QTWPIALQNR
301: DIVAIAKTGS GKTLGYLIPA FTLLRHCRND PRNGPTVLIL APTRELATQI QNEALRFGRS SRISCTCLYG GAPKGPQLQE LERGADIVVA TPGRLNDILE
401: MRKIDFQQVS LLVLDEADRM LDMGFEPQIR KIVNEIPPRR QTLMYTATWP NEVRKIANDL LVNPVQVNIG SVDELAANKA ITQYVEVVPQ MEKERRLEQI
501: LRSQERGSKV IIFCATKRLC DHLSRSVGRN FGAVVIHGDK SQGERDWVLN QFRSGKSCVL IATDVAARGL DIKDIRVVIN YDFPTGVEDY VHRIGRTGRA
601: GATGVAFTFF TEQDWKYAPD LIKVLEGANQ QVPPQVRDIA MRGGGGGGPG FNQDRRGMVN RFDSGRGGSR WDSAGEFGGR GGGFGGRSGG FGMRDDSFGR
701: GRGFPGPDGG RMNVGRGGFG RFGYNNMDGR GFGRGGGGRG FSRGGGRFDN RRGRSRSRSP DLVRPRRSPS YSRSRSRSYS RSRSRSWSRS RSRSPRRSGH
801: KRSRSYSRSP SPVYERRDRR PRVSGFDIKP PAESVVNPDT VGTAAASETV VPAPLSERQG NGVVESEVEA ALVDKP
101: NGPQGSFQHP AAVTQFQQPG ANLAHQQLGP RPPHHMDQML HQKSHASPFR SNNTYENNLQ ARPGNDSYGN TRMEGPMRGA QPRHPAAMPE DIRIGGGPPA
201: HADPAMGQTG HGPYGHAGPA FPTAGRPHFA TTPDGPHLSP VDSYRKQHEI TVTGENIPAP FITFESSGLP PELLRELLSA GFPSPTPIQA QTWPIALQNR
301: DIVAIAKTGS GKTLGYLIPA FTLLRHCRND PRNGPTVLIL APTRELATQI QNEALRFGRS SRISCTCLYG GAPKGPQLQE LERGADIVVA TPGRLNDILE
401: MRKIDFQQVS LLVLDEADRM LDMGFEPQIR KIVNEIPPRR QTLMYTATWP NEVRKIANDL LVNPVQVNIG SVDELAANKA ITQYVEVVPQ MEKERRLEQI
501: LRSQERGSKV IIFCATKRLC DHLSRSVGRN FGAVVIHGDK SQGERDWVLN QFRSGKSCVL IATDVAARGL DIKDIRVVIN YDFPTGVEDY VHRIGRTGRA
601: GATGVAFTFF TEQDWKYAPD LIKVLEGANQ QVPPQVRDIA MRGGGGGGPG FNQDRRGMVN RFDSGRGGSR WDSAGEFGGR GGGFGGRSGG FGMRDDSFGR
701: GRGFPGPDGG RMNVGRGGFG RFGYNNMDGR GFGRGGGGRG FSRGGGRFDN RRGRSRSRSP DLVRPRRSPS YSRSRSRSYS RSRSRSWSRS RSRSPRRSGH
801: KRSRSYSRSP SPVYERRDRR PRVSGFDIKP PAESVVNPDT VGTAAASETV VPAPLSERQG NGVVESEVEA ALVDKP
0001: MATTEDTPAS AGPRYAPEDP TLPQPWKGLI DGSTGILYYW NPETNVTQYE RPSAPPPHSA TTPKLAQIPV PSSGQGHQAQ HEQAKPVGHV SQQHGFQQQP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
0101: QQFPSQHVRP QMMQQHPAQQ MPQQSGQQFP QQQSQSMVPH PHGHPSVQTY QPTTQQQQQG MQNQHSQMPQ QLSHQYAHSQ QHYMGFRPHM QTQGLQNSHQ
0201: TPQGGPHGQQ FPSQQEYNSL APKREGDEFH GGKKTGFSQP HLPNSERSPS QNTHFEANAA SQKTNANLAM AQKCNGPQAN AAVTQFQQPG ANLIHQQLGP
0301: RAPNQMDQTM LHQKSHVSPF QSNNTYENNL QSRPGNDSYV NMRMEVPVRG AQPLHPAAMP KDIRISGGPP TNADPAMGQT GHGTYGHAGP AFPNKSLVRP
0401: HFVTSPDVPH LSPVEIYRKQ HEVTTTGENI PAPYITFESS GLPPEILREL LSAGFPSPTP IQAQTWPIAL QSRDIVAIAK TGSGKTLGYL IPAFILLRHC
0501: RNDSRNGPTV LILAPTRELA TQIQDEALRF GRSSRISCTC LYGGAPKGPQ LKELERGADI VVATPGRLND ILEMKMIDFQ QVSLLVLDEA DRMLDMGFEP
0601: QIRKIVNEIP PRRQTLMYTA TWPKEVRKIA SDLLVNPVQV NIGRVDELAA NKAITQYVEV VPQMEKERRL EQILRSQERG SKVIIFCSTK RLCDHLARSV
0701: GRHFGAVVIH GDKTQGERDW VLNQFRSGKS CVLIATDVAA RGLDIKDIRV VINYDFPTGV EDYVHRIGRT GRAGATGVAF TFFTEQDWKY APDLIKVLEG
0801: ANQQVPPQVR DIAMRGGGGG GPGYSQDRRG MVNRFDSGGG GTRWDSGGGF GGRGGGFSGR EGGFGGREGG FGGREGGFGG RGGRFGMRDD SFGRGGNRGR
0901: GFTGPDAGHM NVGGRGGFGR FGNNNNMESR GFGRGSGRGF GRGVGRFDNR RGRSRSRSPD LVRPRRRSSS YSRSRSRSGS YSRSRSRSRS WSRSRSRSPR
1001: HSRDRGGHNR SRSYSRSPSP VYERRDRAPR VSGFDIKPPV ESVVNLDMNA AAAIENVVPT SLSERQGNGV VESEVEAALV RPVVDEEP
Arabidopsis Description
RH40DEAD-box ATP-dependent RNA helicase 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SQV1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.