CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67749	Canola	cytosol	97.17	97.01
CDX71948	Canola	cytosol	89.85	90.45
CDY06034	Canola	cytosol	86.36	90.26
AT3G58510.2	Thale cress	cytosol	89.52	87.91
CDY47978	Canola	plastid	61.06	87.8
CDY14843	Canola	cytosol, plastid	81.53	80.07
CDX98304	Canola	cytosol, plastid	59.73	77.87
CDX67752	Canola	cytosol	78.54	74.57
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	76.04	73.47
CDY49232	Canola	cytosol	76.21	73.28
KRH38030	Soybean	endoplasmic reticulum	73.71	72.5
CDX71944	Canola	cytosol	76.21	72.24
Solyc03g052980.2.1	Tomato	nucleus	73.21	71.9
PGSC0003DMT400002828	Potato	cytosol	73.04	71.04
KRH71800	Soybean	plastid	72.05	70.87
TraesCS4B01G126000.1	Wheat	cytosol, plastid	69.55	69.55
TraesCS4D01G148700.1	Wheat	golgi	69.38	69.38
HORVU4Hr1G031280.1	Barley	cytosol, plastid	69.38	69.38
Zm00001d048924_P001	Maize	plasma membrane	68.39	67.6
Os11t0599500-00	Rice	nucleus, plasma membrane	70.05	67.58
KXG28851	Sorghum	cytosol, plastid	68.39	65.76
TraesCS4A01G141400.1	Wheat	plastid	69.55	63.72
CDX88990	Canola	cytosol, plastid	48.25	51.97
CDY00570	Canola	nucleus	40.43	40.03
CDX84672	Canola	cytosol	28.12	37.81
CDY02459	Canola	cytosol	29.28	35.27
CDY10596	Canola	nucleus	29.28	35.27
CDY16735	Canola	cytosol	32.95	33.5
CDY48128	Canola	cytosol	33.11	33.5
CDY41747	Canola	nucleus	29.62	32.96
CDY65864	Canola	nucleus	28.95	32.58
CDY66221	Canola	nucleus	28.79	32.28
CDX87315	Canola	cytosol	27.62	32.05
CDY61276	Canola	cytosol	27.62	31.98
CDY39973	Canola	cytosol	27.45	31.85
CDY38671	Canola	cytosol	27.45	31.79
CDX67949	Canola	cytosol	28.45	31.43
CDX83333	Canola	nucleus	32.95	31.08
CDY53786	Canola	nucleus	29.28	29.83
CDX91036	Canola	cytosol	33.78	29.68
CDY37696	Canola	nucleus	28.95	29.49
CDX91943	Canola	cytosol	32.61	29.47
CDY28671	Canola	cytosol	32.45	29.41
CDX84112	Canola	nucleus	14.64	29.33
CDX74304	Canola	cytosol	32.45	28.34
CDX80096	Canola	cytosol	34.28	28.3
CDY37796	Canola	cytosol	34.28	28.07
CDX95719	Canola	cytosol	34.28	28.03
CDX79541	Canola	nucleus	28.45	27.19
CDX85591	Canola	cytosol	33.61	26.86
CDY72529	Canola	cytosol	26.79	25.84
CDX79384	Canola	cytosol	15.47	23.85
CDX74101	Canola	cytosol	32.11	22.03
CDY08048	Canola	nucleus	32.11	21.93
CDY44720	Canola	nucleus	29.62	20.6
CDY41597	Canola	nucleus	24.96	19.4
CDY31513	Canola	nucleus	29.62	16.09
CDX91037	Canola	cytosol	2.83	9.71
CDX91039	Canola	cytosol	2.83	9.71

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EAT1	EnsemblPlants:CDX98301	ProteinID:CDX98301	ProteinID:CDX98301.1
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00105841001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0004EBABB5	SEG:seg	:	:	:

Description

BnaC06g16620D

Coordinates

chrLK031904:+:444437..448193

Molecular Weight (calculated)

65051.7 Da

IEP (calculated)

7.360

GRAVY (calculated)

-0.478

Length

601 amino acids

Sequence
(BLAST)

001: MSASWADVAD SEKAASRAKP AYVPPHLRNR QSEPVAHLPQ NDRGGYGGQP SRWAPGGGVG GGGGYRNDVG RPGQGYGGRG SGGWNNRGGG WDREVNPFGD
101: DADLEPAVLE NTGINFDAYE DIPVETSGGD VPPPVNTFAD IDLGEALNLN IRRCKYVRPT PVQRNAIPIL LAERDLMACA QTGSGKTAAF CFPIISGIMR
201: DQHLQRPRGS RTVYPLAVIL SPTRELASQI HDEAKKFAYQ TGVKVVVAYG GTPINQQLRE LERGVDILVA TPGRLNDLLE RARVSMQMIK FLALDEADRM
301: LDMGFEPQIR KIVEQMDMPP RGMRQTMLFS ATFPSEIQRL AADFLSNYIF LAVGRVGSST DLIAQRVEYV HEADKKSHLM DLLHAQRETQ DKQSLTLVFV
401: ETKRSADALE NWLCMNEFPA TSIHGDRTQQ EREVALRSFK TGRTPILVAT DVAARGLDIP HVAHVVNFDL PNDIDDYVHR IGRTGRAGKS GIATAFFNEK
501: NAQLARQLAE LMQEANQEVP EWLTRYASRA SFGGGKKRGG GRFGGRDFRR EGSFGSGGGR GNDYYGGGGY GGGGYSGAPS GGGYGGAPSG GYGGGVTSAW
601: D

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.