Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84672 | Canola | cytosol | 65.66 | 92.39 |
| CDY53786 | Canola | nucleus | 76.15 | 81.19 |
| CDY37696 | Canola | nucleus | 72.02 | 76.78 |
| AT2G33730.1 | Thale cress | nucleus | 85.21 | 73.12 |
| KRH51212 | Soybean | nucleus | 76.47 | 68.62 |
| KRH01937 | Soybean | nucleus | 75.83 | 67.56 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 76.31 | 67.42 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 56.28 | 67.17 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 75.52 | 67.0 |
| PGSC0003DMT400043101 | Potato | nucleus | 75.04 | 66.76 |
| Solyc02g081290.2.1 | Tomato | nucleus | 67.41 | 64.93 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 67.25 | 63.9 |
| PGSC0003DMT400024330 | Potato | cytosol | 67.25 | 63.23 |
| Zm00001d013453_P001 | Maize | nucleus | 73.29 | 62.81 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 24.96 | 62.55 |
| Zm00001d033704_P007 | Maize | extracellular | 73.29 | 62.47 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 71.7 | 62.04 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 71.7 | 61.87 |
| Os03t0708600-02 | Rice | nucleus | 72.02 | 61.55 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 62.96 | 61.02 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 62.8 | 60.86 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 44.04 | 60.61 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 31.32 | 60.24 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 71.86 | 58.7 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 66.45 | 58.14 |
| KXG37746 | Sorghum | nucleus | 73.29 | 57.05 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 23.53 | 56.7 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 57.87 | 56.52 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 71.7 | 56.3 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 53.26 | 56.02 |
| OQU83862 | Sorghum | nucleus | 56.6 | 55.45 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 28.62 | 47.37 |
| CDY47978 | Canola | plastid | 23.85 | 35.89 |
| CDX98304 | Canola | cytosol, plastid | 24.01 | 32.75 |
| CDY10596 | Canola | nucleus | 25.6 | 32.26 |
| CDY02459 | Canola | cytosol | 25.6 | 32.26 |
| CDX87315 | Canola | cytosol | 24.96 | 30.31 |
| CDY61276 | Canola | cytosol | 24.96 | 30.25 |
| CDY39973 | Canola | cytosol | 24.8 | 30.12 |
| CDY38671 | Canola | cytosol | 24.64 | 29.87 |
| CDY06034 | Canola | cytosol | 27.19 | 29.74 |
| CDX71948 | Canola | cytosol | 27.5 | 28.98 |
| CDY49232 | Canola | cytosol | 28.62 | 28.8 |
| CDX67749 | Canola | cytosol | 27.34 | 28.57 |
| CDX67949 | Canola | cytosol | 24.64 | 28.49 |
| CDX98301 | Canola | cytosol | 27.19 | 28.45 |
| CDX67752 | Canola | cytosol | 28.62 | 28.44 |
| CDY14843 | Canola | cytosol, plastid | 27.66 | 28.43 |
| CDX71944 | Canola | cytosol | 28.46 | 28.23 |
| CDY16735 | Canola | cytosol | 26.39 | 28.09 |
| CDY48128 | Canola | cytosol | 26.39 | 27.95 |
| CDY66221 | Canola | nucleus | 23.53 | 27.61 |
| CDY41747 | Canola | nucleus | 23.69 | 27.59 |
| CDY65864 | Canola | nucleus | 23.37 | 27.53 |
| CDX83333 | Canola | nucleus | 26.87 | 26.53 |
| CDX84112 | Canola | nucleus | 11.76 | 24.67 |
| CDX91943 | Canola | cytosol | 25.91 | 24.51 |
| CDY28671 | Canola | cytosol | 25.12 | 23.83 |
| CDX80096 | Canola | cytosol | 27.34 | 23.63 |
| CDY72529 | Canola | cytosol | 23.37 | 23.6 |
| CDX74304 | Canola | cytosol | 25.76 | 23.55 |
| CDX95719 | Canola | cytosol | 27.5 | 23.54 |
| CDY37796 | Canola | cytosol | 27.19 | 23.3 |
| CDX91036 | Canola | cytosol | 24.8 | 22.81 |
| CDX79384 | Canola | cytosol | 13.51 | 21.79 |
| CDX88990 | Canola | cytosol, plastid | 18.76 | 21.15 |
| CDX85591 | Canola | cytosol | 24.96 | 20.88 |
| CDY44720 | Canola | nucleus | 27.66 | 20.14 |
| CDY41597 | Canola | nucleus | 23.69 | 19.28 |
| CDX74101 | Canola | cytosol | 24.17 | 17.35 |
| CDY08048 | Canola | nucleus | 24.01 | 17.16 |
| CDY31513 | Canola | nucleus | 27.82 | 15.82 |
| CDY00570 | Canola | nucleus | 12.56 | 13.01 |
| CDX91037 | Canola | cytosol | 2.86 | 10.29 |
| CDX91039 | Canola | cytosol | 2.86 | 10.29 |
Protein Annotations
| MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | GO:A0A078CQW9 | EnsemblPlants:CDX79541 | ProteinID:CDX79541 | ProteinID:CDX79541.1 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00132292001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF23 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0004EE7601 | SEG:seg | : | : | : | : |
Description
BnaC03g18770D
Coordinates
chrLK031818:-:605403..607361
Molecular Weight (calculated)
72217.1 Da
IEP (calculated)
9.790
GRAVY (calculated)
-0.783
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSINQVMG STSATSADAN KPVYLSKAQR EELALNRRHD QISDHRLLRE QLDRSTHDRK RSRGRDRDGD RDRERSRRER DREPNRRIRD RKREEEEAKS
101: REKARVEKLL DREKELDAIK EQYLGVKKPK KRVTKPSEKL RFSFDWENTE DTSRDVNALY QNPHEAQLLF GRGFLAGTDR RQQKKQAAEH HTSVDRHWSD
201: KRLDEMSERD WRIFKEDFNI SYKGSKIPPP MRSWEESKLS SELLKARDVI GVAETGSGKT HAFVLPMLAY ISRLPPLSEE NIREGPYAVV MAPTHELAQQ
301: IEKETVKFAR YLGLRVTLTV GGQSIEEQGL KLAQGCEIVI ATPGRLIDCL ERRFVVLNQC NYVVLDEADR MIDMGFEPQV ACVLDAMPSS NLKPEKEEEE
401: LDEKKIYRTT YMFSATMASG VERLARKYLR NPVVVTIGTA GKAKDLISQH VIMMKESEKY FRLQKLLDEL GDKTAFVFVN TRIKCHSIAK SLDKAGYRVT
501: TSHGGKSQEQ REVSLEGFRA KRYNVLVATD VVGRGIDIQD VAHVINYDMP KPIEMYTHRI GRTGRAGKSG VATSFLTLND TDVFYDLKQI LVQSNSAVPP
601: ELARHEASRF KPGTVPDRPP RHSDTGYIN
101: REKARVEKLL DREKELDAIK EQYLGVKKPK KRVTKPSEKL RFSFDWENTE DTSRDVNALY QNPHEAQLLF GRGFLAGTDR RQQKKQAAEH HTSVDRHWSD
201: KRLDEMSERD WRIFKEDFNI SYKGSKIPPP MRSWEESKLS SELLKARDVI GVAETGSGKT HAFVLPMLAY ISRLPPLSEE NIREGPYAVV MAPTHELAQQ
301: IEKETVKFAR YLGLRVTLTV GGQSIEEQGL KLAQGCEIVI ATPGRLIDCL ERRFVVLNQC NYVVLDEADR MIDMGFEPQV ACVLDAMPSS NLKPEKEEEE
401: LDEKKIYRTT YMFSATMASG VERLARKYLR NPVVVTIGTA GKAKDLISQH VIMMKESEKY FRLQKLLDEL GDKTAFVFVN TRIKCHSIAK SLDKAGYRVT
501: TSHGGKSQEQ REVSLEGFRA KRYNVLVATD VVGRGIDIQD VAHVINYDMP KPIEMYTHRI GRTGRAGKSG VATSFLTLND TDVFYDLKQI LVQSNSAVPP
601: ELARHEASRF KPGTVPDRPP RHSDTGYIN
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.