Factsheet for TraesCS6B01G364400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G364300.1	Wheat	nucleus, plastid	99.23	99.23
HORVU6Hr1G080730.2	Barley	cytosol	45.92	91.13
TraesCS1B01G445500.1	Wheat	cytosol	51.62	73.3
CDX84672	Canola	cytosol	50.39	73.15
TraesCS4B01G043900.1	Wheat	nucleus	78.43	69.82
Zm00001d033704_P007	Maize	extracellular	77.81	68.43
Zm00001d013453_P001	Maize	nucleus	76.89	67.98
Os03t0708600-02	Rice	nucleus	75.65	66.71
GSMUA_Achr3P01410_001	Banana	nucleus	53.31	65.65
CDY53786	Canola	nucleus	59.48	65.42
VIT_09s0054g01810.t01	Wine grape	cytosol	71.19	65.16
PGSC0003DMT400043101	Potato	nucleus	70.11	64.36
VIT_03s0038g00010.t01	Wine grape	cytosol	70.57	64.33
CDY37696	Canola	nucleus	58.4	64.24
KRH51212	Soybean	nucleus	69.18	64.05
KRH01937	Soybean	nucleus	69.03	63.46
Solyc02g081290.2.1	Tomato	nucleus	63.48	63.09
CDX79541	Canola	nucleus	61.02	62.96
PGSC0003DMT400024330	Potato	cytosol	64.87	62.93
Solyc02g068190.1.1	Tomato	cytosol, nucleus	63.94	62.69
Bra021872.1-P	Field mustard	nucleus	63.64	62.67
KXG37746	Sorghum	nucleus	77.81	62.5
AT2G33730.1	Thale cress	nucleus	68.41	60.57
TraesCS5B01G079300.1	Wheat	nucleus	66.41	59.94
TraesCS3B01G121100.1	Wheat	cytosol	26.19	34.84
TraesCS5B01G120500.1	Wheat	nucleus	24.5	29.94
TraesCS4B01G126000.1	Wheat	cytosol, plastid	27.43	29.62
TraesCS3B01G451900.1	Wheat	cytosol	25.89	29.27
TraesCS5B01G464500.2	Wheat	cytosol	27.58	28.23
TraesCS5B01G152200.1	Wheat	cytosol	25.12	26.77
TraesCS3B01G141300.1	Wheat	cytosol	24.96	26.38
TraesCS3B01G149300.8	Wheat	cytosol	25.58	25.54
TraesCS4B01G181800.1	Wheat	nucleus	27.12	22.98
TraesCS3B01G208800.1	Wheat	cytosol	20.96	22.04
TraesCS3B01G230800.1	Wheat	nucleus	26.66	22.04
TraesCS3B01G193400.3	Wheat	cytosol	21.42	20.78
TraesCS2B01G170700.1	Wheat	nucleus	28.2	17.99
TraesCS7B01G187000.1	Wheat	nucleus	29.28	17.87
TraesCS3B01G117000.1	Wheat	cytosol	26.5	12.77

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS6B01G364400	EnsemblPlants:TraesCS6B01G364400.1
TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6B:+:636211995..636213944

Molecular Weight (calculated)

73583.2 Da

IEP (calculated)

9.932

GRAVY (calculated)

-0.651

Length

649 amino acids

Sequence
(BLAST)

001: MMMKRSLELE EARPVYLSPE KRQRLALESL PRAAPPLPTP KPARESSSSS HRDSFRHRDR EEKRGSFRHR DREEKDVLEK TAEKLRETIR EQYLGSNKTK
101: TRTVSMKLSA KFRFSFDWEN TDDTSCDTNA LHQSPLLLYG RGFLAGIDRR EQKKAAAQKE NRVELRRDTS PEESTKKKAE MRDSFGMRVD RHWTDKAAEE
201: MTERDWRIFR EDFNISYKGS RLPRPMRDWK ESKLGARLLR AIDKVGYKKP SPIQMATIPL GLQQRDVIGV AETGSGKTAA FVLPMLSYIS RLPPITDAEA
301: AEDPYALVMA PTRELAQQIE RETTKLSTYL GIKVVSIVGG QSIEEQGFKV RQGCEVVIAT PGRLLDCLER RYIVLNQCNY VVLDEADRMI DMGFEPQVAG
401: VLDAMPSSNL KPQNAEEELD EKKIYRTTYM FSATMPPAVE RLAKKYLRNP VVVTIGTAGS ATGLVTQSVI MVKESDKMPR LRKIMADLGG DKTAVVFCNT
501: KRSVDDRAKD LERLGFRVTT LHGGKSQDQR EISLDGFRNR RFNVLVATDV AGRGIDIPDV AHVINYEMPS SVDTYTHRIG RTGRAGKKGL ATSFLTLEDR
601: DIFFDLKQML VQSNSSVPPE LARHDASKFK PGSIPDRPPK RCDTKYASH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.