Factsheet for TraesCS4B01G043900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G270200.1	Wheat	nucleus	99.59	99.86
HORVU4Hr1G007110.17	Barley	mitochondrion	99.18	93.9
TraesCS4D01G041400.1	Wheat	nucleus	99.73	90.76
Zm00001d033704_P007	Maize	extracellular	91.22	90.11
Os03t0708600-02	Rice	nucleus	89.99	89.13
Zm00001d013453_P001	Maize	nucleus	89.57	88.96
KXG37746	Sorghum	nucleus	91.22	82.3
GSMUA_Achr3P01410_001	Banana	nucleus	58.98	81.59
KRH01937	Soybean	nucleus	76.13	78.61
KRH51212	Soybean	nucleus	75.58	78.6
TraesCS6B01G364400.1	Wheat	nucleus, plastid	69.82	78.43
TraesCS6B01G364300.1	Wheat	nucleus, plastid	69.68	78.27
PGSC0003DMT400043101	Potato	nucleus	75.72	78.08
CDX84672	Canola	cytosol	47.87	78.08
CDY53786	Canola	nucleus	62.69	77.46
VIT_03s0038g00010.t01	Wine grape	cytosol	75.03	76.83
VIT_09s0054g01810.t01	Wine grape	cytosol	74.62	76.73
Solyc02g081290.2.1	Tomato	nucleus	68.72	76.72
Bra021872.1-P	Field mustard	nucleus	68.72	76.02
TraesCS5B01G079300.1	Wheat	nucleus	73.25	74.27
CDY37696	Canola	nucleus	60.08	74.24
TraesCS1B01G445500.1	Wheat	cytosol	46.36	73.96
AT2G33730.1	Thale cress	nucleus	73.94	73.53
PGSC0003DMT400024330	Potato	cytosol	66.26	72.2
Solyc02g068190.1.1	Tomato	cytosol, nucleus	65.43	72.05
CDX79541	Canola	nucleus	61.87	71.7
TraesCS3B01G121100.1	Wheat	cytosol	24.01	35.86
TraesCS4B01G126000.1	Wheat	cytosol, plastid	25.65	31.11
TraesCS5B01G120500.1	Wheat	nucleus	22.36	30.7
TraesCS3B01G451900.1	Wheat	cytosol	24.01	30.49
TraesCS5B01G464500.2	Wheat	cytosol	26.34	30.28
TraesCS3B01G141300.1	Wheat	cytosol	23.32	27.69
TraesCS5B01G152200.1	Wheat	cytosol	22.91	27.42
TraesCS3B01G149300.8	Wheat	cytosol	23.32	26.15
TraesCS4B01G181800.1	Wheat	nucleus	26.47	25.2
TraesCS3B01G230800.1	Wheat	nucleus	24.55	22.8
TraesCS3B01G208800.1	Wheat	cytosol	19.07	22.53
TraesCS3B01G193400.3	Wheat	cytosol	19.48	21.23
TraesCS2B01G170700.1	Wheat	nucleus	27.85	19.96
TraesCS7B01G187000.1	Wheat	nucleus	28.53	19.57
TraesCS3B01G117000.1	Wheat	cytosol	24.55	13.29

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4B01G043900	EnsemblPlants:TraesCS4B01G043900.1
TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4B:-:31875157..31877685

Molecular Weight (calculated)

83877.3 Da

IEP (calculated)

9.283

GRAVY (calculated)

-0.936

Length

729 amino acids

Sequence
(BLAST)

001: MKRSFDAMEA KPVFLSKEER QRLALERRQA AVADQRRSAL DILQSLPRPP PPPPPSVAPR DSSSSHRDPS DRDRGDRGDR DRDRDRDRRR DDDSRRDRDR
101: DRDRDRDEPS RRDRDRDRDR DRDREHRDRE RGERDKDREK DRLEKMAERE REKELEAIKE QYLGSKKPKK RVIKPSEKFR FSFDWENTED TSRDMNMLYQ
201: APHEARLLYG RGFLAGIDRR EQKKAAAVFE KETRAEQRRK FGVEDRPEDD VADKKKAAAA EMYDAFDMRV DRHWSEKGIE EMTERDWRIF REDFNISYKG
301: SRIPRPMRNW PESKLGTELL RAIEKVGYKK PSPIQMAAIP LGLQQRDVIG IAETGSGKTA AFVLPMLSYI TRLPPISEDN EAEGPYAVVM APTRELAQQI
401: EEETVKFATY LGIKVVSIVG GQSIEEQGFK IRQGCEVVIA TPGRLLDCLE RRYAVLNQCN YVVLDEADRM IDMGFEPQVV GVLDAMPSSN LKPENEEEEL
501: DEKRIYRTTY MFSATMPPAV ERLARKYLRN PVVVTIGTAG KATDLITQNV IMVKESEKMS RLQKILTDLG DKTAIVFCNT KKSADNRAKD LDKAGFRVTA
601: LHGGKSQDQR EISLDGFRNR RFNVLVATDV AGRGIDIPDV AHVINYEMPS SVDTYTHRIG RTGRAGKKGL ATSFLTLDNT DIFFDLKQML TQSNSPVPPE
701: LARHEASKFK PGSVPDRPPR RNDTVYASH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.