Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G193400.3 | Wheat | cytosol | 94.81 | 87.44 |
| TraesCS4B01G126000.1 | Wheat | cytosol, plastid | 31.6 | 32.45 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 23.99 | 30.33 |
| TraesCS5B01G464500.2 | Wheat | cytosol | 30.47 | 29.65 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 20.42 | 27.57 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 21.07 | 24.48 |
| TraesCS3B01G451900.1 | Wheat | cytosol | 22.2 | 23.87 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 23.5 | 22.31 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 22.04 | 20.96 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 22.04 | 20.96 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 20.1 | 20.2 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 19.29 | 19.54 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 22.53 | 19.33 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 22.53 | 19.07 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 23.01 | 18.09 |
| Os08t0154225-00 | Rice | cytosol | 16.53 | 17.14 |
| TraesCS4B01G181800.1 | Wheat | nucleus | 20.58 | 16.58 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 23.66 | 14.36 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 24.64 | 14.3 |
| TraesCS3B01G117000.1 | Wheat | cytosol | 24.31 | 11.14 |
| Os08t0154200-01 | Rice | cytosol, nucleus | 3.4 | 9.81 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:DEAD/DEAH_box_helicase_dom | InterPro:DUF3615 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | PFAM:PF12274 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF556 | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS3B01G208800 | EnsemblPlants:TraesCS3B01G208800.1 | TIGR:cd00079 | : |
Description
No Description!
Coordinates
chr3B:+:244984912..244996448
Molecular Weight (calculated)
69051.1 Da
IEP (calculated)
6.686
GRAVY (calculated)
-0.193
Length
617 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRHGVLPDQ EDRIDLSPAT LLPKVRAYEM AGGEHAKGLA ELKIVEGAIG NLSREALPGP VYGFQEVGLA EALLHNLARC QFETPTPLQC YSIPMVLAGR
101: DLLVCAHKGS GKTTALLIPV LSGLVTAPVA AARTKPRALL LVPTARLAKQ IGADIRKFSY RTGIRVHSKM KGKMQKCQLE ASIDIVVSTP LRLINMVRTS
201: QVSLEAVKYL VICELGLMLD MGFEKMLRKI VDDMHIPPKS ARHTLLSSGT FQPAVQKLAW DFLSDYLFIT DGRLEFSIGL TKQKIELASE AEKRGLLLNL
301: LQKQSVSSAG MSQLITVVFV ETKGKADSLK NWLCNEGFPA TVIFADSSQQ AYAASPGLDV ANVDHLINYD LPKSVEEYVE RIRTFGRVGS ATSFFTESNR
401: SIAKGLLELM IEANVEVPDW LLDYANPDYT CRSVELDSKD EENDKYRYDL ARSLASRKID NIYDLAGVWA ELNCRRNKQS FDDSRITTMS KDCCIAFTQQ
501: EEYKFLKFYF VKVTQHCYSP ESYGKTYWHY NFIAKIKSKS GIWTEGIYFA ERKLECGVET FCCCFLEPSD NGECYGCQHG KVKVRHPTRG DYERGTPDHV
601: WLSDGDCEIS DDDMVDF
101: DLLVCAHKGS GKTTALLIPV LSGLVTAPVA AARTKPRALL LVPTARLAKQ IGADIRKFSY RTGIRVHSKM KGKMQKCQLE ASIDIVVSTP LRLINMVRTS
201: QVSLEAVKYL VICELGLMLD MGFEKMLRKI VDDMHIPPKS ARHTLLSSGT FQPAVQKLAW DFLSDYLFIT DGRLEFSIGL TKQKIELASE AEKRGLLLNL
301: LQKQSVSSAG MSQLITVVFV ETKGKADSLK NWLCNEGFPA TVIFADSSQQ AYAASPGLDV ANVDHLINYD LPKSVEEYVE RIRTFGRVGS ATSFFTESNR
401: SIAKGLLELM IEANVEVPDW LLDYANPDYT CRSVELDSKD EENDKYRYDL ARSLASRKID NIYDLAGVWA ELNCRRNKQS FDDSRITTMS KDCCIAFTQQ
501: EEYKFLKFYF VKVTQHCYSP ESYGKTYWHY NFIAKIKSKS GIWTEGIYFA ERKLECGVET FCCCFLEPSD NGECYGCQHG KVKVRHPTRG DYERGTPDHV
601: WLSDGDCEIS DDDMVDF
001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD
Arabidopsis Description
RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.