Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0159900-01 | Rice | extracellular, nucleus | 88.32 | 18.02 |
| TraesCS3B01G208800.1 | Wheat | cytosol | 9.81 | 3.4 |
| TraesCS3B01G193400.3 | Wheat | cytosol | 9.81 | 3.14 |
| Os06t0602400-01 | Rice | nucleus, plasma membrane | 5.14 | 2.27 |
| Os11t0599500-00 | Rice | nucleus, plasma membrane | 5.14 | 1.77 |
| Os02t0150100-02 | Rice | cytosol | 3.27 | 1.52 |
| Os03t0308500-01 | Rice | mitochondrion | 5.14 | 1.43 |
| Os03t0805200-01 | Rice | plastid | 4.21 | 1.41 |
| Os07t0202100-01 | Rice | nucleus | 4.21 | 1.41 |
| Os06t0697200-00 | Rice | cytosol | 2.8 | 0.97 |
| Os01t0172200-01 | Rice | cytosol | 2.8 | 0.79 |
| Os07t0301200-01 | Rice | cytosol | 1.87 | 0.78 |
| Os01t0549400-01 | Rice | nucleus | 2.8 | 0.76 |
| Os03t0708600-02 | Rice | nucleus | 1.4 | 0.41 |
| Os01t0911000-01 | Rice | nucleus | 0.47 | 0.3 |
| Os01t0197200-01 | Rice | plasma membrane | 0.47 | 0.2 |
| Os02t0150000-00 | Rice | mitochondrion | 0.0 | 0.0 |
| Os08t0154225-00 | Rice | cytosol | 0.0 | 0.0 |
| Os01t0911100-01 | Rice | nucleus, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os08t0154200-01 | EnsemblPlantsGene:Os08g0154200 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | PANTHER:PTHR15744 | ProteinID:BAT03869.1 |
| SEG:seg | UniParc:UPI0000DD93C4 | UniProt:A0A0P0XBX9 | MapMan:35.1 | : | : |
Description
RNA helicase 45Similar to DEAD-box ATP-dependent RNA helicase 45. (Os08t0154200-01)
Coordinates
chr8:-:3113598..3115221
Molecular Weight (calculated)
22915.7 Da
IEP (calculated)
6.136
GRAVY (calculated)
-0.489
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: DEARRSAKKA QAREYGYEED KSDSDSDEEG GVRKAGGDLA AQAIAAAQAA ATLAAAKAAS NANQQVQSTN AGSLLSIPVV ANAPNNEATA RALQAALNIQ
101: QNLARIQAHV VPEHYEVELD INDFPQNARW KITHKETLGP IQDWTEAAIT TRGTFIPQGK IVGANERKLY LFIEGPTELS VKKAKSELKR VLEDCANHAL
201: NLPGSAQTGK YSVI
101: QNLARIQAHV VPEHYEVELD INDFPQNARW KITHKETLGP IQDWTEAAIT TRGTFIPQGK IVGANERKLY LFIEGPTELS VKKAKSELKR VLEDCANHAL
201: NLPGSAQTGK YSVI
001: MDVDEETKPE NDGDAKMVDL ENETAATVSE SGGDGAVDEE EIDPLDAFMN TMVLPEVEKF CNGAPPPAVN DGTLDSKMNG KESGDRPKKG FNKALGRIIQ
101: GEDSDSDYSE PKNDDDPSLD EDDEEFMKRV KKTKAEKLSL VDHSKIEYEP FRKNFYIEVK DISRMTQEEV NTYRKELELK VHGKDVPRPI KFWHQTGLTS
201: KILDTMKKLN YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGDGPIGLVM APTRELVQQI HSDIRKFSKP LGIRCVPVYG
301: GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PERQTVLFSA TFPRQVETLA RKVLNKPVEI
401: QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWSEKGK ILVFVQSQEK CDALYRDMIK SSYPCLSLHG GKDQTDREST ISDFKNDVCN LLIATSVAAR
501: GLDVKELELV VNFDAPNHYE DYVHRVGRTG RAGRKGCAVT FISEDDAKYA PDLVKALELS EQPVPDDLKA LADGFMVKVK QGIEQAHGTG YGGSGFKFNE
601: EEEEVRKAAK KAQAKEYGFE EDKSDSEDEN DVVRKAGGGE ISQQQATFAQ IAAIAAAAKA AAAAPVSAPV TANQLLANGG GLAAMPGVLP VTVPTLPSEG
701: AGRAAAMVAA MNLQHNLAKI QADAMPEHYE AELEINDFPQ NARWKVTHKE TLGPISEWTG AAITTRGQFY PTGRIPGPGE RKLYLFIEGP SEKSVKHAKA
801: ELKRVLEDIT NQAMSSLPGG ASGRYSVL
101: GEDSDSDYSE PKNDDDPSLD EDDEEFMKRV KKTKAEKLSL VDHSKIEYEP FRKNFYIEVK DISRMTQEEV NTYRKELELK VHGKDVPRPI KFWHQTGLTS
201: KILDTMKKLN YEKPMPIQTQ ALPIIMSGRD CIGVAKTGSG KTLGFVLPML RHIKDQPPVE AGDGPIGLVM APTRELVQQI HSDIRKFSKP LGIRCVPVYG
301: GSGVAQQISE LKRGTEIVVC TPGRMIDILC TSSGKITNLR RVTFLVMDEA DRMFDMGFEP QITRIIQNIR PERQTVLFSA TFPRQVETLA RKVLNKPVEI
401: QVGGRSVVNK DITQLVEVRP ESDRFLRLLE LLGEWSEKGK ILVFVQSQEK CDALYRDMIK SSYPCLSLHG GKDQTDREST ISDFKNDVCN LLIATSVAAR
501: GLDVKELELV VNFDAPNHYE DYVHRVGRTG RAGRKGCAVT FISEDDAKYA PDLVKALELS EQPVPDDLKA LADGFMVKVK QGIEQAHGTG YGGSGFKFNE
601: EEEEVRKAAK KAQAKEYGFE EDKSDSEDEN DVVRKAGGGE ISQQQATFAQ IAAIAAAAKA AAAAPVSAPV TANQLLANGG GLAAMPGVLP VTVPTLPSEG
701: AGRAAAMVAA MNLQHNLAKI QADAMPEHYE AELEINDFPQ NARWKVTHKE TLGPISEWTG AAITTRGQFY PTGRIPGPGE RKLYLFIEGP SEKSVKHAKA
801: ELKRVLEDIT NQAMSSLPGG ASGRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.