Factsheet for Os07t0301200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER96257	Sorghum	cytosol	84.38	84.38
Zm00001d019449_P004	Maize	nucleus	83.4	84.06
HORVU5Hr1G037290.3	Barley	nucleus	83.01	80.19
TraesCS5D01G125100.1	Wheat	nucleus	83.2	79.78
TraesCS5B01G120500.1	Wheat	nucleus	82.42	79.47
TraesCS5A01G114400.1	Wheat	nucleus	82.81	79.25
KRH39630	Soybean	nucleus	71.29	67.97
KRH74291	Soybean	nucleus	71.29	67.97
GSMUA_Achr11P...	Banana	nucleus	75.0	66.55
CDY65864	Canola	nucleus	68.55	65.73
CDY66221	Canola	nucleus	67.97	64.93
AT1G31970.1	Thale cress	cytosol	67.97	64.8
Bra023227.1-P	Field mustard	nucleus	68.36	64.46
CDY41747	Canola	nucleus	67.19	63.7
Bra035518.1-P	Field mustard	nucleus	66.02	63.06
Solyc08g076200.2.1	Tomato	nucleus	67.97	62.93
PGSC0003DMT400024026	Potato	nucleus	67.97	62.48
VIT_02s0109g00380.t01	Wine grape	cytosol	72.46	59.08
CDX84112	Canola	nucleus	29.1	49.67
Os01t0197200-01	Rice	plasma membrane	38.87	40.28
Os06t0602400-01	Rice	nucleus, plasma membrane	31.25	33.06
Os02t0150100-02	Rice	cytosol	29.69	33.04
Os01t0911100-01	Rice	nucleus, plastid	30.27	32.49
Os11t0599500-00	Rice	nucleus, plasma membrane	33.2	27.29
Os07t0202100-01	Rice	nucleus	33.01	26.49
Os03t0805200-01	Rice	plastid	32.81	26.37
Os06t0697200-00	Rice	cytosol	30.27	25.04
Os01t0172200-01	Rice	cytosol	36.33	24.51
Os01t0549400-01	Rice	nucleus	36.13	23.36
Os03t0308500-01	Rice	mitochondrion	34.18	22.73
Os03t0708600-02	Rice	nucleus	32.62	22.69
Os08t0154225-00	Rice	cytosol	25.98	22.35
Os02t0150000-00	Rice	mitochondrion	7.42	21.97
Os08t0159900-01	Rice	extracellular, nucleus	35.74	17.45
Os08t0154200-01	Rice	cytosol, nucleus	0.78	1.87
Os01t0911000-01	Rice	nucleus	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4342981	EMBL:AB110202	ProteinID:BAC84904.1	ProteinID:BAF21338.1
ProteinID:BAT01081.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0042254	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os07g0301200	EnsemblPlants:Os07t0301200-01	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF215	UniProt:Q6YS30	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00001BF858	RefSeq:XP_015647459.1	SEG:seg	:	:

Description

RNA helicase 5Similar to RNA helicase (Fragment). (Os07t0301200-01);Similar to STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP-dependent helicase. (Os07t0301200-02)

Coordinates

chr7:-:11887224..11894422

Molecular Weight (calculated)

55626.0 Da

IEP (calculated)

9.345

GRAVY (calculated)

-0.315

Length

512 amino acids

Sequence
(BLAST)

001: MGRSMLPEQQ EDVSRKSKKE KKSKKDKKRK LEAEAEVVVV EAAAATSTDE ATKSSKKKRA KGDLGQGEEA ENGGGKVVAV TGKGSADAKY APLSSFAATA
101: LPPQVLDCCK GFERPSPIQA YAWPYLLDGR DFIGIAATGS GKTIAFGVPA LMHVRRKMGE KSAKKGVPRV LVLSPTRELA QQIADVLCEA GAPCGISSVC
201: LYGGTSKGPQ ISALKSGVDI VIGTPGRMKD LIEMGICRLN DVSFVVLDEA DRMLDMGFEP EVRAILSQTA SVRQTVMFSA TWPPAVHQLA QEFMDPNPIK
301: VVIGSEDLAA NHDVMQIVEV LDDRSRDSRL VALLDKYHKA QRNRVLVFVL YKREATRVET MLQRRGWSAV SVHGDKAQHD RTKALSLFKE GSCPLMIATD
401: VASRGLDIPD VEVVINYSYP LTTEDYVHRI GRTGRAGKKG VAHTFFTQEN KGLAGELVNV LREAGQVVPP ALTKFGTHVK KKESQIYGSH FKEIKADAPK
501: STKITFGDSD ED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.