Factsheet for PGSC0003DMT400024026

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g076200.2.1	Tomato	nucleus	97.31	98.01
Zm00001d019449_P004	Maize	nucleus	62.84	68.9
EER96257	Sorghum	cytosol	62.84	68.36
Os07t0301200-01	Rice	cytosol	62.48	67.97
KRH74291	Soybean	nucleus	65.17	67.6
KRH39630	Soybean	nucleus	64.63	67.04
HORVU5Hr1G037290.3	Barley	nucleus	62.3	65.47
CDY65864	Canola	nucleus	62.66	65.36
TraesCS5D01G125100.1	Wheat	nucleus	62.48	65.17
TraesCS5A01G114400.1	Wheat	nucleus	62.48	65.05
TraesCS5B01G120500.1	Wheat	nucleus	61.94	64.97
Bra023227.1-P	Field mustard	nucleus	63.2	64.83
CDY66221	Canola	nucleus	61.94	64.37
AT1G31970.1	Thale cress	cytosol	61.76	64.06
CDY41747	Canola	nucleus	61.22	63.15
Bra035518.1-P	Field mustard	nucleus	60.5	62.87
GSMUA_Achr11P...	Banana	nucleus	64.09	61.87
VIT_02s0109g00380.t01	Wine grape	cytosol	67.15	59.55
CDX84112	Canola	nucleus	26.93	50.0
PGSC0003DMT400083878	Potato	cytosol	35.37	39.32
PGSC0003DMT400080614	Potato	nucleus	32.32	29.36
PGSC0003DMT400081851	Potato	cytosol	31.24	28.81
PGSC0003DMT400010921	Potato	cytosol	30.88	28.57
PGSC0003DMT400002828	Potato	cytosol	31.24	28.16
PGSC0003DMT400073340	Potato	cytosol	28.19	26.66
PGSC0003DMT400046821	Potato	cytosol	34.29	26.6
PGSC0003DMT400036663	Potato	cytosol	28.01	26.49
PGSC0003DMT400001391	Potato	cytosol	33.39	25.48
PGSC0003DMT400024330	Potato	cytosol	28.9	24.07
PGSC0003DMT400023277	Potato	cytosol	33.21	23.9
PGSC0003DMT400043101	Potato	nucleus	29.98	23.62
PGSC0003DMT400071932	Potato	cytosol	4.13	20.72
PGSC0003DMT400011665	Potato	nucleus	31.78	15.87

Protein Annotations

EntrezGene:102592140	Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1AJB8
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400009295	PGSC:PGSC0003DMG400009295	EnsemblPlants:PGSC0003DMT400024026
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002967B64
RefSeq:XP_006352924.1	SEG:seg	:	:	:	:

Description

DEAD-box RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400009295]

Coordinates

chr8:-:48764305..48772840

Molecular Weight (calculated)

61641.8 Da

IEP (calculated)

8.728

GRAVY (calculated)

-0.539

Length

557 amino acids

Sequence
(BLAST)

001: MVAKQLDDEP QTLTNSANYE SKSHKKQKRK LEDPEVEEVV VESKKEKKKK KKQKQKQEEE GSNGNTETLD GSNGNTEIFD GSAELSEKKK SKKEKKSKVN
101: EGNLDDGSDV SVVNGEVKES STNVVVTGKG ANESKYKALE KFVDAGLPSE VLECCKNFEK PSPIQSHSWP FLLDGRDFIG IARTGSGKTL AFGIPAIMHI
201: TSKRKSKKSK NPVCLVLSPT RELAQQISDV LCEAGKPTGV QSVCLYGGVD KHHQKASLRS GVDIVIGTPG RLQDLMEMGA CNLKEVSFVV LDEADRMLDL
301: GFEPAVRAIL SQTCSVRQMV MFSATWPLEV HQLAQEFMDP NPIKVVVGSE DLAANHDVMQ IVEVLEDRAR DERLQCLLEK YHKSRRNRVL VFVLYKKEAS
401: RVEMMLQKRG WKVVSISGDK QQHARTKALS LFKDGSCPLL IATDVAARGL DIPDVEVVIN YSFPLTTEDY VHRIGRTGRA GKKGVAHTFF TKDNKGLSGE
501: LINVLREAGQ TVPAALLNFG THVKKKESKL YGAHFREIDA NAPKATKIKF GDSDNED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.