Factsheet for PGSC0003DMT400083878

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044860.1.1	Tomato	nucleus	94.61	98.96
GSMUA_Achr10P...	Banana	cytosol	86.83	87.53
Os01t0197200-01	Rice	plasma membrane	84.23	85.43
VIT_09s0002g02100.t01	Wine grape	cytosol	87.43	85.05
KXG31614	Sorghum	cytosol	83.03	84.55
KRH47127	Soybean	nucleus	85.23	84.22
Bra030884.1-P	Field mustard	nucleus	83.83	84.17
CDY02459	Canola	cytosol	83.83	84.17
CDY10596	Canola	nucleus	83.83	84.17
KRH44155	Soybean	cytosol	85.03	84.02
TraesCS3A01G103700.1	Wheat	cytosol	82.44	83.27
TraesCS3D01G106000.1	Wheat	cytosol	82.24	83.06
TraesCS3B01G121100.1	Wheat	cytosol	80.44	82.58
AT1G55150.2	Thale cress	cytosol	81.44	77.57
KRH48684	Soybean	cytosol, endoplasmic reticulum	72.85	76.68
Zm00001d039452_P002	Maize	cytosol	83.83	75.95
HORVU3Hr1G018850.7	Barley	cytosol	79.04	72.39
PGSC0003DMT400046821	Potato	cytosol	69.26	48.33
PGSC0003DMT400080614	Potato	nucleus	46.91	38.34
PGSC0003DMT400024026	Potato	nucleus	39.32	35.37
PGSC0003DMT400001391	Potato	cytosol	47.51	32.6
PGSC0003DMT400081851	Potato	cytosol	38.92	32.28
PGSC0003DMT400010921	Potato	cytosol	38.72	32.23
PGSC0003DMT400002828	Potato	cytosol	37.33	30.26
PGSC0003DMT400036663	Potato	cytosol	34.53	29.37
PGSC0003DMT400073340	Potato	cytosol	34.53	29.37
PGSC0003DMT400023277	Potato	cytosol	43.51	28.17
PGSC0003DMT400024330	Potato	cytosol	34.13	25.56
PGSC0003DMT400043101	Potato	nucleus	35.73	25.32
PGSC0003DMT400071932	Potato	cytosol	4.59	20.72
PGSC0003DMT400011665	Potato	nucleus	42.32	19.01

Protein Annotations

EntrezGene:102594982	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1D796
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400033639	PGSC:PGSC0003DMG400033639	EnsemblPlants:PGSC0003DMT400083878
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295D6C3
RefSeq:XP_006366150.1	RefSeq:XP_006366151.1	SEG:seg	:	:	:

Description

Ethylene-responsive RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400033639]

Coordinates

chr12:-:51855084..51863526

Molecular Weight (calculated)

55701.4 Da

IEP (calculated)

9.027

GRAVY (calculated)

-0.488

Length

501 amino acids

Sequence
(BLAST)

001: MSRYDSRPAD PGSYRDRRSD SGFGGGSNYR SSSSSRRDSE GKESPRKVNL DDLTPFEKNF YVESPSIAAM TEGEVEEYRL RREITIEGRD VPKPIKSFHD
101: IGFPDYVLQE IEKAGFTEPT PIQAQGWPMA LKGRDLIGIA ETGSGKTIAY LLPAIVHVNA QPILDHGDGP IVLVLAPTRE LAVQIQQEAT KFGASSRIKN
201: TCIYGGVPKG PQVRDLQKGV EIVIATPGRL IDMLESNHTN LRRVTYLVLD EADRMLDMGF EPQIRKIVSQ IRPDRQTLYW SATWPKEVEQ LARQFLFNAY
301: KVIIGSADLK ANHAIRQHVE IVSESQKYNK LVKLLEDIMD GSRILIFMDT KKGCDQVTRQ LRMDGWPALS IHGDKSQAER DWVLSEFKAG KSPIMTATDV
401: AARGLDVKDV KFVINYDFPG SLEDYVHRIG RTGRAGASGT AYTFFTAANA RFAKDLVNIL EEAGQKVGPE LAKMGRGAPP PPGHGGFRDR GRGYGGNKQW
501: S

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.