Factsheet for VIT_09s0002g02100.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g044860.1.1	Tomato	nucleus	81.55	87.68
PGSC0003DMT400083878	Potato	cytosol	85.05	87.43
GSMUA_Achr10P...	Banana	cytosol	84.08	87.12
KXG31614	Sorghum	cytosol	82.14	85.98
Os01t0197200-01	Rice	plasma membrane	82.33	85.83
KRH47127	Soybean	nucleus	83.69	85.01
KRH44155	Soybean	cytosol	83.3	84.62
CDY10596	Canola	nucleus	81.36	83.97
Bra030884.1-P	Field mustard	nucleus	81.17	83.77
CDY02459	Canola	cytosol	81.17	83.77
TraesCS3D01G106000.1	Wheat	cytosol	80.58	83.67
TraesCS3A01G103700.1	Wheat	cytosol	80.39	83.47
TraesCS3B01G121100.1	Wheat	cytosol	79.03	83.4
AT1G55150.2	Thale cress	cytosol	78.83	77.19
KRH48684	Soybean	cytosol, endoplasmic reticulum	71.26	77.1
Zm00001d039452_P002	Maize	cytosol	82.52	76.85
HORVU3Hr1G018850.7	Barley	cytosol	76.7	72.21
VIT_17s0000g09130.t01	Wine grape	cytosol	58.64	49.43
VIT_06s0004g00850.t01	Wine grape	cytosol	27.18	36.65
VIT_06s0004g08160.t01	Wine grape	plastid	34.95	31.69
VIT_02s0109g00380.t01	Wine grape	cytosol	38.64	31.69
VIT_09s0002g08120.t01	Wine grape	cytosol	35.53	31.18
VIT_11s0016g05090.t01	Wine grape	cytosol	36.5	30.67
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	36.7	30.39
VIT_13s0156g00070.t01	Wine grape	cytosol	36.31	30.31
VIT_14s0066g01020.t01	Wine grape	cytosol	47.96	28.62
VIT_07s0005g01600.t01	Wine grape	cytosol	42.33	28.27
VIT_03s0038g00010.t01	Wine grape	cytosol	34.37	24.86
VIT_09s0054g01810.t01	Wine grape	cytosol	34.17	24.82
VIT_05s0020g00470.t01	Wine grape	cytosol	48.35	21.6
VIT_03s0038g04130.t01	Wine grape	nucleus	40.97	18.4

Protein Annotations

EntrezGene:100248020	wikigene:100248020	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EMBL:AM472385	ProteinID:CAN70592
ProteinID:CAN70592.1	ProteinID:CCB59336	ProteinID:CCB59336.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HY13	EMBL:FN596494
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100248020	wikigene:LOC100248020	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002109FA5
ArrayExpress:VIT_09s0002g02100	EnsemblPlantsGene:VIT_09s0002g02100	EnsemblPlants:VIT_09s0002g02100.t01	RefSeq:XP_002279117	RefSeq:XP_002279117.1	SEG:seg

Description

No Description!

Coordinates

chr9:-:1902966..1916052

Molecular Weight (calculated)

56686.9 Da

IEP (calculated)

9.406

GRAVY (calculated)

-0.446

Length

515 amino acids

Sequence
(BLAST)

001: MSRYDGRSGD PGSYRDRRSE SGFGGASGYG SGGVRSSSSK RDLDGVESPR KPDLDGLTPF EKNFYVESPA VAAMSEKEVE QYRERREITV EGRDVPKPVM
101: NFRDVGLPEY VMQEITKAGF AEPTPIQAQG WPMALKGRDV IGIAETGSGK TLAYLLPAII HVNAQPILAP GDGPIVLVLA PTRELAVQIQ QEAAKFGASS
201: RIKNTCIHGG VPKGPQIRDL QKGVEIVIAT PGRLIDMLES HHTNLRRVTY LVLDEADRML DMGFEPQIRK IVSQIRPDRQ TLYWSATWPK EVEQLARKFL
301: YNPCKVVIGS ADLKANHAIR QHVEIVSENQ KYNRLVKLLE DIMDGGRILI FMDTKKGCDQ ITRQLRMDGW PALSIHGDKS QAERDWVLSE FKAGKSPIMT
401: ATDVAARGLD VKDVKFVINY DFPGSLEDYV HRIGRTGRAG AKGTAYTFFT AANARFAKEL ITILEEAGQR VAPELAAMGR GAPPPPSGQL DSPPAQRHGG
501: FRDRGRGHGS GRAWG

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.