Factsheet for VIT_09s0002g08120.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94409	Soybean	cytosol	90.12	89.97
KRH68534	Soybean	cytosol	89.95	89.95
CDY38671	Canola	cytosol	78.88	89.21
PGSC0003DMT400036663	Potato	cytosol	89.27	88.96
PGSC0003DMT400073340	Potato	cytosol	88.76	88.45
CDY39973	Canola	cytosol	78.02	88.42
Solyc03g117440.2.1	Tomato	cytosol, nucleus	89.27	88.07
CDY61276	Canola	cytosol	77.85	88.05
CDX87315	Canola	cytosol	77.68	88.03
Solyc06g068280.2.1	Tomato	extracellular, nucleus	88.76	87.56
Bra008471.1-P	Field mustard	cytosol	83.3	86.86
Os02t0150100-02	Rice	cytosol	67.97	86.74
AT5G51280.1	Thale cress	cytosol	86.88	86.29
Bra018133.1-P	Field mustard	cytosol	85.86	85.71
GSMUA_Achr2P09160_001	Banana	cytosol	79.73	85.56
Bra035177.1-P	Field mustard	cytosol	85.35	85.2
CDX67949	Canola	cytosol	77.17	83.27
AT4G33370.1	Thale cress	cytosol	75.3	81.55
Bra003568.1-P	Field mustard	cytosol	81.77	81.22
HORVU5Hr1G048040.1	Barley	plastid	74.11	76.05
TraesCS3B01G141300.1	Wheat	cytosol	79.39	75.9
Zm00001d047502_P001	Maize	extracellular	79.39	75.4
EER92293	Sorghum	cytosol	79.05	75.08
CDX79384	Canola	cytosol	49.74	74.87
TraesCS5D01G159000.1	Wheat	cytosol	75.81	73.19
TraesCS5B01G152200.1	Wheat	cytosol	75.81	73.07
GSMUA_Achr1P13820_001	Banana	mitochondrion	66.95	72.51
HORVU3Hr1G022710.1	Barley	mitochondrion	78.71	72.41
TraesCS5A01G153700.1	Wheat	cytosol	71.72	72.21
Os06t0697200-00	Rice	cytosol	74.96	71.08
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	79.22	70.67
VIT_09s0002g02100.t01	Wine grape	cytosol	31.18	35.53
VIT_06s0004g00850.t01	Wine grape	cytosol	22.32	34.29
VIT_06s0004g08160.t01	Wine grape	plastid	29.81	30.81
VIT_11s0016g05090.t01	Wine grape	cytosol	29.47	28.22
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	29.64	27.97
VIT_13s0156g00070.t01	Wine grape	cytosol	28.79	27.39
VIT_07s0005g01600.t01	Wine grape	cytosol	34.07	25.94
VIT_09s0054g01810.t01	Wine grape	cytosol	29.98	24.82
VIT_03s0038g00010.t01	Wine grape	cytosol	29.81	24.58
VIT_02s0109g00380.t01	Wine grape	cytosol	25.55	23.89
VIT_17s0000g09130.t01	Wine grape	cytosol	23.85	22.91
VIT_14s0066g01020.t01	Wine grape	cytosol	29.3	19.93
VIT_03s0038g04130.t01	Wine grape	nucleus	33.73	17.26
VIT_05s0020g00470.t01	Wine grape	cytosol	29.13	14.83

Protein Annotations

EntrezGene:100249809	wikigene:100249809	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A5B7F0	EMBL:AM449262
ProteinID:CAN78736	ProteinID:CAN78736.1	ProteinID:CBI36411	ProteinID:CBI36411.3	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom
EMBL:FN596494	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0071013	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100249809	wikigene:LOC100249809
InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0001524156	ArrayExpress:VIT_09s0002g08120
EnsemblPlantsGene:VIT_09s0002g08120	EnsemblPlants:VIT_09s0002g08120.t01	unigene:Vvi.8598	RefSeq:XP_002271334	RefSeq:XP_002271334.2	InterPro:Znf_CCHC
InterPro:Znf_CCHC_sf	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:8729505..8735338

Molecular Weight (calculated)

65748.2 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.278

Length

587 amino acids

Sequence
(BLAST)

001: MEEDDDYVEY IPVKKRRAME AQRILQRKGK SSALEDEAEK SKLAEAKPSL LVKASQLKRD LPEISPAEQI VQQEKEMIEH LSDRKTLMSV RELAKGITYT
101: EPLLTGWKPP LPIRRMSRKE CESIRKQWHI IVDGDEIPPP IKNFKDMRFP EPILKNLKAK GIVQPTPIQV QGLPVILSGR DMIGIAFTGS GKTLVFVLPL
201: IMVALQEEVS MPIVPGEGPF GLVICPSREL ARQTYEVVEQ FLVPMRECGY PELRPLLCIG GVDMRSQLEV VKKGVHIIVA TPGRLKDMLA KKKLNLDNCR
301: YLTLDEADRL VDLGFEDDIR EVFDHFKAQR QTLLFSATMP TKIQNFARSA LVKPVTVNVG RAGAANLDVI QEVEYVKQEA KIVYLLECLQ KTSPPVLIFC
401: ENKADVDDIH EYLLLKGVEA VAIHGGKDQE EREYAISSFK AGKKDVLVAT DVASKGLDFP DIKHVINYDM PAEIENYVHR IGRTGRCGKT GIATTFINKN
501: QSETTLLDLK HLLQEAKQRI PPVLAELNDP MEDVDAITDA SGVKGCAYCG GLGHRIRDCP KLEHQKSMAI ASSRRDYFGS GGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.