Factsheet for AT5G51280.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38671	Canola	cytosol	83.42	94.99
Bra008471.1-P	Field mustard	cytosol	89.51	93.96
CDY61276	Canola	cytosol	82.23	93.64
CDY39973	Canola	cytosol	82.06	93.63
CDX87315	Canola	cytosol	81.73	93.24
Bra018133.1-P	Field mustard	cytosol	92.72	93.2
Bra035177.1-P	Field mustard	cytosol	92.05	92.52
CDX67949	Canola	cytosol	80.37	87.32
AT4G33370.1	Thale cress	cytosol	79.86	87.08
VIT_09s0002g08120.t01	Wine grape	cytosol	86.29	86.88
Bra003568.1-P	Field mustard	cytosol	86.63	86.63
PGSC0003DMT400036663	Potato	cytosol	86.29	86.59
KRH68534	Soybean	cytosol	85.62	86.2
KRG94409	Soybean	cytosol	85.45	85.88
Solyc03g117440.2.1	Tomato	cytosol, nucleus	86.46	85.88
Os02t0150100-02	Rice	cytosol	65.48	84.13
PGSC0003DMT400073340	Potato	cytosol	83.76	84.04
Solyc06g068280.2.1	Tomato	extracellular, nucleus	84.09	83.53
GSMUA_Achr2P09160_001	Banana	cytosol	73.94	79.89
CDX79384	Canola	cytosol	52.12	78.97
TraesCS3B01G141300.1	Wheat	cytosol	76.48	73.62
Zm00001d047502_P001	Maize	extracellular	76.65	73.3
HORVU5Hr1G048040.1	Barley	plastid	70.73	73.08
EER92293	Sorghum	cytosol	76.14	72.82
HORVU3Hr1G022710.1	Barley	mitochondrion	76.48	70.85
TraesCS5D01G159000.1	Wheat	cytosol	71.74	69.74
TraesCS5B01G152200.1	Wheat	cytosol	71.74	69.62
TraesCS5A01G153700.1	Wheat	cytosol	68.19	69.13
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	76.65	68.84
GSMUA_Achr1P13820_001	Banana	mitochondrion	63.11	68.82
Os06t0697200-00	Rice	cytosol	70.9	67.69
AT1G28180.1	Thale cress	cytosol	24.03	38.59
AT1G55150.2	Thale cress	cytosol	29.27	32.89
AT5G63120.2	Thale cress	cytosol	30.63	30.63
AT1G31970.1	Thale cress	cytosol	26.4	29.05
AT3G58510.2	Thale cress	cytosol	28.93	27.94
AT2G42520.2	Thale cress	nucleus, plastid	29.44	27.49
AT3G58570.1	Thale cress	cytosol	29.78	27.24
AT3G01540.2	Thale cress	cytosol	27.58	26.33
AT2G47330.1	Thale cress	cytosol	32.83	25.53
AT2G33730.1	Thale cress	nucleus	29.61	23.87
AT5G14610.1	Thale cress	cytosol	27.07	22.47
AT3G09620.2	Thale cress	nucleus	31.64	18.89
AT1G20920.3	Thale cress	nucleus	33.84	17.15
AT3G06480.1	Thale cress	cytosol	28.43	15.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:835202	UniProt:A0A178U9F4	ProteinID:AED96061.1	EMBL:AK226380
ArrayExpress:AT5G51280	EnsemblPlantsGene:AT5G51280	RefSeq:AT5G51280	TAIR:AT5G51280	RefSeq:AT5G51280-TAIR-G	EnsemblPlants:AT5G51280.1
TAIR:AT5G51280.1	Unigene:At.29686	ProteinID:BAA97391.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0046872	GO:GO:0071013	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	RefSeq:NP_199941.1
ProteinID:OAO90446.1	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PO:PO:0000013
PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081
PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103
PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005
PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50158
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	UniProt:Q9LU46
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	SUPFAM:SSF57756
UniParc:UPI000009DB8E	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:

Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]

Coordinates

chr5:+:20841239..20843992

Molecular Weight (calculated)

65810.3 Da

IEP (calculated)

6.654

GRAVY (calculated)

-0.199

Length

591 amino acids

Sequence
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.