Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10596 | Canola | nucleus | 86.88 | 91.58 |
| Bra030884.1-P | Field mustard | nucleus | 86.69 | 91.38 |
| CDY02459 | Canola | cytosol | 86.5 | 91.18 |
| Solyc12g044860.1.1 | Tomato | nucleus | 74.52 | 81.84 |
| PGSC0003DMT400083878 | Potato | cytosol | 77.57 | 81.44 |
| KRH47127 | Soybean | nucleus | 78.14 | 81.07 |
| GSMUA_Achr10P... | Banana | cytosol | 76.24 | 80.68 |
| KRH44155 | Soybean | cytosol | 77.76 | 80.67 |
| Os01t0197200-01 | Rice | plasma membrane | 74.52 | 79.35 |
| KXG31614 | Sorghum | cytosol | 73.95 | 79.06 |
| VIT_09s0002g02100.t01 | Wine grape | cytosol | 77.19 | 78.83 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 73.76 | 78.23 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 73.76 | 78.23 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 72.43 | 78.07 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 68.63 | 75.84 |
| Zm00001d039452_P002 | Maize | cytosol | 74.52 | 70.89 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 72.62 | 69.84 |
| AT5G63120.2 | Thale cress | cytosol | 62.17 | 55.33 |
| AT1G28180.1 | Thale cress | cytosol | 27.38 | 39.13 |
| AT1G31970.1 | Thale cress | cytosol | 37.83 | 37.06 |
| AT3G01540.2 | Thale cress | cytosol | 43.54 | 37.0 |
| AT4G33370.1 | Thale cress | cytosol | 33.27 | 32.29 |
| AT5G14610.1 | Thale cress | cytosol | 43.54 | 32.16 |
| AT5G51280.1 | Thale cress | cytosol | 32.89 | 29.27 |
| AT3G58510.2 | Thale cress | cytosol | 32.51 | 27.94 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 33.08 | 27.49 |
| AT2G47330.1 | Thale cress | cytosol | 39.54 | 27.37 |
| AT3G58570.1 | Thale cress | cytosol | 32.89 | 26.78 |
| AT2G33730.1 | Thale cress | nucleus | 32.7 | 23.47 |
| AT3G06480.1 | Thale cress | cytosol | 42.97 | 20.77 |
| AT3G09620.2 | Thale cress | nucleus | 34.98 | 18.59 |
| AT1G20920.3 | Thale cress | nucleus | 37.26 | 16.81 |
Protein Annotations
| MapMan:16.4.1.1.4 | Gene3D:3.40.50.300 | EntrezGene:841958 | UniProt:A0A1P8ATW1 | ProteinID:ANM60093.1 | ArrayExpress:AT1G55150 |
| EnsemblPlantsGene:AT1G55150 | RefSeq:AT1G55150 | TAIR:AT1G55150 | RefSeq:AT1G55150-TAIR-G | EnsemblPlants:AT1G55150.2 | Unigene:At.20425 |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_001322402.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF269 |
| InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0008483A0B |
| SEG:seg | : | : | : | : | : |
Description
DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
Coordinates
chr1:+:20574474..20577325
Molecular Weight (calculated)
58524.9 Da
IEP (calculated)
8.021
GRAVY (calculated)
-0.409
Length
526 amino acids
Sequence
(BLAST)
(BLAST)
001: MYLNEYEENP LNFDQIRGIV RYQILYGCVG EEEFASFSNL LYLSDSGFGG TSSYGSSGSH TSSKKDNDGN ESPRKLDLDG LTPFEKNFYV ESPAVAAMTD
101: TEVEEYRKLR EITVEGKDIP KPVKSFRDVG FPDYVLEEVK KAGFTEPTPI QSQGWPMAMK GRDLIGIAET GSGKTLSYLL PAIVHVNAQP MLAHGDGPIV
201: LVLAPTRELA VQIQQEASKF GSSSKIKTTC IYGGVPKGPQ VRDLQKGVEI VIATPGRLID MMESNNTNLR RVTYLVLDEA DRMLDMGFDP QIRKIVSHIR
301: PDRQTLYWSA TWPKEVEQLS KKFLYNPYKV IIGSSDLKAN RAIRQIVDVI SESQKYNKLV KLLEDIMDGS RILVFLDTKK GCDQITRQLR MDGWPALSIH
401: GDKSQAERDW VLSEFRSGKS PIMTATDVAA RGLDVKDVKY VINYDFPGSL EDYVHRIGRT GRAGAKGTAY TFFTVANARF AKELTNILQE AGQKVSPELA
501: SMGRSTAPPP PGLGGFRDRG SRRGWS
101: TEVEEYRKLR EITVEGKDIP KPVKSFRDVG FPDYVLEEVK KAGFTEPTPI QSQGWPMAMK GRDLIGIAET GSGKTLSYLL PAIVHVNAQP MLAHGDGPIV
201: LVLAPTRELA VQIQQEASKF GSSSKIKTTC IYGGVPKGPQ VRDLQKGVEI VIATPGRLID MMESNNTNLR RVTYLVLDEA DRMLDMGFDP QIRKIVSHIR
301: PDRQTLYWSA TWPKEVEQLS KKFLYNPYKV IIGSSDLKAN RAIRQIVDVI SESQKYNKLV KLLEDIMDGS RILVFLDTKK GCDQITRQLR MDGWPALSIH
401: GDKSQAERDW VLSEFRSGKS PIMTATDVAA RGLDVKDVKY VINYDFPGSL EDYVHRIGRT GRAGAKGTAY TFFTVANARF AKELTNILQE AGQKVSPELA
501: SMGRSTAPPP PGLGGFRDRG SRRGWS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.