Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38671 | Canola | cytosol | 83.21 | 86.9 |
| CDY61276 | Canola | cytosol | 82.29 | 85.93 |
| CDY39973 | Canola | cytosol | 81.92 | 85.71 |
| CDX87315 | Canola | cytosol | 81.73 | 85.52 |
| Os02t0150100-02 | Rice | cytosol | 69.19 | 81.52 |
| CDX67949 | Canola | cytosol | 81.73 | 81.43 |
| Bra008471.1-P | Field mustard | cytosol | 83.58 | 80.46 |
| AT5G51280.1 | Thale cress | cytosol | 87.08 | 79.86 |
| Bra018133.1-P | Field mustard | cytosol | 85.98 | 79.25 |
| Bra035177.1-P | Field mustard | cytosol | 84.87 | 78.23 |
| KRH68534 | Soybean | cytosol | 82.1 | 75.81 |
| Bra003568.1-P | Field mustard | cytosol | 82.66 | 75.8 |
| KRG94409 | Soybean | cytosol | 81.92 | 75.51 |
| VIT_09s0002g08120.t01 | Wine grape | cytosol | 81.55 | 75.3 |
| PGSC0003DMT400036663 | Potato | cytosol | 81.73 | 75.21 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 81.73 | 74.45 |
| PGSC0003DMT400073340 | Potato | cytosol | 79.89 | 73.51 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 79.7 | 72.61 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 70.3 | 69.65 |
| HORVU5Hr1G048040.1 | Barley | plastid | 71.77 | 68.01 |
| CDX79384 | Canola | cytosol | 48.34 | 67.18 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 75.65 | 66.78 |
| Zm00001d047502_P001 | Maize | extracellular | 75.09 | 65.86 |
| EER92293 | Sorghum | cytosol | 74.72 | 65.53 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 73.25 | 65.19 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 72.88 | 64.97 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 69.56 | 64.67 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 64.39 | 64.39 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 75.46 | 64.11 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 75.65 | 62.31 |
| Os06t0697200-00 | Rice | cytosol | 70.66 | 61.87 |
| AT1G28180.1 | Thale cress | cytosol | 25.83 | 38.04 |
| AT1G55150.2 | Thale cress | cytosol | 32.29 | 33.27 |
| AT5G63120.2 | Thale cress | cytosol | 31.55 | 28.93 |
| AT1G31970.1 | Thale cress | cytosol | 28.23 | 28.49 |
| AT3G01540.2 | Thale cress | cytosol | 31.0 | 27.14 |
| AT3G58510.2 | Thale cress | cytosol | 29.7 | 26.31 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 30.26 | 25.91 |
| AT3G58570.1 | Thale cress | cytosol | 30.07 | 25.23 |
| AT2G47330.1 | Thale cress | cytosol | 34.32 | 24.47 |
| AT2G33730.1 | Thale cress | nucleus | 31.92 | 23.6 |
| AT5G14610.1 | Thale cress | cytosol | 29.7 | 22.61 |
| AT3G09620.2 | Thale cress | nucleus | 31.18 | 17.07 |
| AT3G06480.1 | Thale cress | cytosol | 32.47 | 16.18 |
| AT1G20920.3 | Thale cress | nucleus | 33.58 | 15.61 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:829474 | ProteinID:AEE86216.1 | ArrayExpress:AT4G33370 | EnsemblPlantsGene:AT4G33370 |
| RefSeq:AT4G33370 | TAIR:AT4G33370 | RefSeq:AT4G33370-TAIR-G | EnsemblPlants:AT4G33370.1 | TAIR:AT4G33370.1 | Unigene:At.65448 |
| ProteinID:CAB38795.1 | ProteinID:CAB80054.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | GO:GO:0046872 | GO:GO:0050662 | GO:GO:0071013 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | RefSeq:NP_195063.1 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF542 |
| UniProt:Q9SZB4 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000AA2DB |
Description
RH43Putative DEAD-box ATP-dependent RNA helicase 43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZB4]
Coordinates
chr4:-:16069669..16071405
Molecular Weight (calculated)
60261.8 Da
IEP (calculated)
7.051
GRAVY (calculated)
-0.120
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MEVDDGYVEY VPVEERLAQM KRKVVEEPGK GMMEHLSDKK KLMSVGELAR GITYTEPLST WWKPPLHVRK MSTKQMDLIR KQWHITVNGE DIPPPIKNFM
101: DMKFPSPLLR MLKDKGIMHP TPIQVQGLPV VLSGRDMIGI AFTGSGKTLV FVLPMIILAL QEEIMMPIAA GEGPIALVIC PSRELAKQTY DVVEQFVASL
201: VEDGYPRLRS LLCIGGVDMR SQLDVVKKGV HIVVATPGRL KDILAKKKMS LDACRLLTLD EADRLVDLGF EDDIRHVFDH FKSQRQTLLF SATMPAKIQI
301: FATSALVKPV TVNVGRAGAA NLDVIQEVEY VKQEAKIVYL LECLQKTTPP VLIFCENKAD VDDIHEYLLL KGVEAVAIHG GKDQEDRDYA ISLFKAGKKD
401: VLVATDVASK GLDFPDIQHV INYDMPGEIE NYVHRIGRTG RCGKTGIATT FINKNQSEIT LLDLKHLLQE AKQRIPPVLA ELNGPMEETE TIANASGVKG
501: CAYCGGLGHR ILQCPKFEHQ KSVAISSSRK DHFGSDGYRG EV
101: DMKFPSPLLR MLKDKGIMHP TPIQVQGLPV VLSGRDMIGI AFTGSGKTLV FVLPMIILAL QEEIMMPIAA GEGPIALVIC PSRELAKQTY DVVEQFVASL
201: VEDGYPRLRS LLCIGGVDMR SQLDVVKKGV HIVVATPGRL KDILAKKKMS LDACRLLTLD EADRLVDLGF EDDIRHVFDH FKSQRQTLLF SATMPAKIQI
301: FATSALVKPV TVNVGRAGAA NLDVIQEVEY VKQEAKIVYL LECLQKTTPP VLIFCENKAD VDDIHEYLLL KGVEAVAIHG GKDQEDRDYA ISLFKAGKKD
401: VLVATDVASK GLDFPDIQHV INYDMPGEIE NYVHRIGRTG RCGKTGIATT FINKNQSEIT LLDLKHLLQE AKQRIPPVLA ELNGPMEETE TIANASGVKG
501: CAYCGGLGHR ILQCPKFEHQ KSVAISSSRK DHFGSDGYRG EV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.