Factsheet for HORVU3Hr1G022710.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G141300.1	Wheat	cytosol	94.83	98.53
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	99.06	96.05
Os02t0150100-02	Rice	cytosol	68.34	94.78
HORVU5Hr1G048040.1	Barley	plastid	79.31	88.46
Zm00001d047502_P001	Maize	extracellular	82.76	85.44
EER92293	Sorghum	cytosol	82.76	85.44
CDY38671	Canola	cytosol	65.67	80.73
CDX87315	Canola	cytosol	65.52	80.69
CDY61276	Canola	cytosol	65.52	80.54
CDY39973	Canola	cytosol	65.36	80.5
KRH68534	Soybean	cytosol	72.73	79.05
KRG94409	Soybean	cytosol	72.73	78.91
VIT_09s0002g08120.t01	Wine grape	cytosol	72.41	78.71
Bra008471.1-P	Field mustard	cytosol	68.81	77.98
PGSC0003DMT400036663	Potato	cytosol	71.94	77.93
GSMUA_Achr2P09160_001	Banana	cytosol	66.77	77.88
Bra018133.1-P	Field mustard	cytosol	71.32	77.38
Solyc03g117440.2.1	Tomato	cytosol, nucleus	71.94	77.14
PGSC0003DMT400073340	Potato	cytosol	71.0	76.91
Bra035177.1-P	Field mustard	cytosol	70.69	76.7
AT5G51280.1	Thale cress	cytosol	70.85	76.48
Solyc06g068280.2.1	Tomato	extracellular, nucleus	71.0	76.13
CDX67949	Canola	cytosol	64.58	75.74
AT4G33370.1	Thale cress	cytosol	64.11	75.46
Bra003568.1-P	Field mustard	cytosol	68.5	73.94
GSMUA_Achr1P13820_001	Banana	mitochondrion	58.15	68.45
CDX79384	Canola	cytosol	40.91	66.92
HORVU1Hr1G083090.1	Barley	cytosol	15.2	38.65
HORVU3Hr1G031710.1	Barley	mitochondrion	13.95	34.1
HORVU3Hr1G018850.7	Barley	cytosol	26.96	31.44
HORVU5Hr1G037290.3	Barley	nucleus	24.61	29.62
HORVU3Hr1G092610.1	Barley	cytosol	26.65	29.62
HORVU3Hr1G092600.1	Barley	cytosol	26.65	29.62
HORVU7Hr1G084210.1	Barley	cytosol	27.27	28.52
HORVU4Hr1G031280.1	Barley	cytosol, plastid	26.65	28.29
HORVU1Hr1G091050.3	Barley	nucleus	25.24	26.92
HORVU5Hr1G109340.2	Barley	plastid	26.33	25.38
HORVU4Hr1G053550.2	Barley	mitochondrion	30.41	24.43
HORVU3Hr1G024610.13	Barley	cytosol, plastid	26.49	23.9
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	13.32	22.37
HORVU4Hr1G007110.17	Barley	mitochondrion	26.33	21.82
HORVU6Hr1G080730.2	Barley	cytosol	10.97	21.41
HORVU2Hr1G025790.1	Barley	nucleus	28.84	18.06
HORVU0Hr1G020490.1	Barley	nucleus	29.47	17.64
HORVU3Hr1G018170.3	Barley	cytosol	26.8	12.37

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287KES8	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:HORVU3Hr1G022710	EnsemblPlants:HORVU3Hr1G022710.1
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B484FBB
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr3H:+:81513043..81541596

Molecular Weight (calculated)

70596.1 Da

IEP (calculated)

8.331

GRAVY (calculated)

-0.239

Length

638 amino acids

Sequence
(BLAST)

001: PLSSPCRARR NPHLCLSFLR TLTPAMPPGA AAAAKSDDED NYEEYIPVSK RRAMEADRLR HQRLSKPAAA SAGSLPPPPP PPTAAPAAAP DDAAPAAKPS
101: LLVTSTQLKR AAPEVTATEQ IILQEREMID NLSNKNTLMS VRELAKGITY TEPLRTGWKP PLRLRRMPRT KADELRRKWH ILVEGDEIPP PARDFRDLRF
201: PEPVLRMLRE KGIVQPTPIQ VQGLPVVLSG RDMIGIAFTG SGKTLVFVLP LIMVALQEEM LMPIVPGEGP FGMIICPSRE LAKQTYDVID MFLTPLKQAG
301: FPEIRPLLCI GGIDMRTQLD VVKKGVHIVV ATPGRLKDLL AKKKMNLDNC RYLTLDEADR LVDLGFEDDI REVFDHFKAQ RQTLLFSATM PKKIQNFAKS
401: ALVKPVIVNV GRAGAANLDV IQEVEYVKED ARIIYLLECL QKTPPPVLIF CENKADVDYI HEYLLLKGVE AVAIHGGKDQ EERQNAIEFF KNGKKDVLVA
501: TDVASKGLDF PDIQHVINYD MPAEIENYVH RIGRTGRCGK TGIATTFINK NQTETTLLDL KHLLKEAKQR IPPVLAELVD PLEDAEAIAK ESGVKGCAFC
601: GGLGHRLADC PKLEHQKSVA IAGSRRDYYG GGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.