Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX87315 | Canola | cytosol | 99.03 | 99.03 |
| CDY61276 | Canola | cytosol | 98.84 | 98.65 |
| CDY38671 | Canola | cytosol | 96.53 | 96.34 |
| Bra018133.1-P | Field mustard | cytosol | 98.84 | 87.07 |
| CDX67949 | Canola | cytosol | 89.19 | 84.93 |
| AT5G51280.1 | Thale cress | cytosol | 93.63 | 82.06 |
| AT4G33370.1 | Thale cress | cytosol | 85.71 | 81.92 |
| Os02t0150100-02 | Rice | cytosol | 71.24 | 80.22 |
| VIT_09s0002g08120.t01 | Wine grape | cytosol | 88.42 | 78.02 |
| KRH68534 | Soybean | cytosol | 88.22 | 77.85 |
| KRG94409 | Soybean | cytosol | 88.22 | 77.72 |
| PGSC0003DMT400036663 | Potato | cytosol | 88.03 | 77.42 |
| Solyc03g117440.2.1 | Tomato | cytosol, nucleus | 88.22 | 76.81 |
| PGSC0003DMT400073340 | Potato | cytosol | 86.68 | 76.23 |
| Solyc06g068280.2.1 | Tomato | extracellular, nucleus | 86.87 | 75.63 |
| CDX79384 | Canola | cytosol | 54.63 | 72.56 |
| GSMUA_Achr2P09160_001 | Banana | cytosol | 75.87 | 71.85 |
| HORVU5Hr1G048040.1 | Barley | plastid | 75.87 | 68.71 |
| TraesCS3B01G141300.1 | Wheat | cytosol | 81.08 | 68.4 |
| Zm00001d047502_P001 | Maize | extracellular | 79.54 | 66.67 |
| EER92293 | Sorghum | cytosol | 78.96 | 66.18 |
| TraesCS5B01G152200.1 | Wheat | cytosol | 77.61 | 66.01 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 77.41 | 65.95 |
| TraesCS5A01G153700.1 | Wheat | cytosol | 73.75 | 65.52 |
| HORVU3Hr1G022710.1 | Barley | mitochondrion | 80.5 | 65.36 |
| TraesCS3A01G122100.1 | Wheat | mitochondrion, plastid | 80.89 | 63.68 |
| GSMUA_Achr1P13820_001 | Banana | mitochondrion | 66.41 | 63.47 |
| Os06t0697200-00 | Rice | cytosol | 75.29 | 63.0 |
| CDX84672 | Canola | cytosol | 29.92 | 34.68 |
| CDY47978 | Canola | plastid | 26.45 | 32.78 |
| CDY10596 | Canola | nucleus | 30.7 | 31.86 |
| CDY02459 | Canola | cytosol | 30.5 | 31.66 |
| CDY16735 | Canola | cytosol | 33.78 | 29.61 |
| CDX98304 | Canola | cytosol, plastid | 26.25 | 29.5 |
| CDY48128 | Canola | cytosol | 33.59 | 29.29 |
| CDX83333 | Canola | nucleus | 34.75 | 28.26 |
| CDY41747 | Canola | nucleus | 29.34 | 28.15 |
| CDY53786 | Canola | nucleus | 31.47 | 27.63 |
| CDY65864 | Canola | nucleus | 28.38 | 27.53 |
| CDY06034 | Canola | cytosol | 30.5 | 27.48 |
| CDX98301 | Canola | cytosol | 31.85 | 27.45 |
| CDY66221 | Canola | nucleus | 28.38 | 27.43 |
| CDY37696 | Canola | nucleus | 31.08 | 27.29 |
| CDX67749 | Canola | cytosol | 31.66 | 27.24 |
| CDX71948 | Canola | cytosol | 31.08 | 26.97 |
| CDY72529 | Canola | cytosol | 32.05 | 26.65 |
| CDY14843 | Canola | cytosol, plastid | 31.47 | 26.63 |
| CDY49232 | Canola | cytosol | 31.47 | 26.08 |
| CDX67752 | Canola | cytosol | 31.47 | 25.75 |
| CDX71944 | Canola | cytosol | 31.47 | 25.71 |
| CDY37796 | Canola | cytosol | 35.71 | 25.2 |
| CDX80096 | Canola | cytosol | 35.33 | 25.14 |
| CDX95719 | Canola | cytosol | 35.52 | 25.03 |
| CDX79541 | Canola | nucleus | 30.12 | 24.8 |
| CDX84112 | Canola | nucleus | 13.71 | 23.67 |
| CDY28671 | Canola | cytosol | 30.12 | 23.53 |
| CDX91943 | Canola | cytosol | 29.92 | 23.31 |
| CDX74304 | Canola | cytosol | 29.92 | 22.53 |
| CDX91036 | Canola | cytosol | 28.76 | 21.78 |
| CDX88990 | Canola | cytosol, plastid | 23.17 | 21.51 |
| CDX85591 | Canola | cytosol | 28.76 | 19.81 |
| CDY44720 | Canola | nucleus | 31.85 | 19.1 |
| CDY41597 | Canola | nucleus | 27.99 | 18.76 |
| CDX74101 | Canola | cytosol | 30.31 | 17.92 |
| CDY08048 | Canola | nucleus | 30.31 | 17.84 |
| CDY31513 | Canola | nucleus | 34.36 | 16.09 |
| CDY00570 | Canola | nucleus | 15.83 | 13.51 |
| CDX91039 | Canola | cytosol | 2.32 | 6.86 |
| CDX91037 | Canola | cytosol | 2.32 | 6.86 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | Gene3D:4.10.60.10 | GO:A0A078HT98 | UniProt:A0A078HT98 | EnsemblPlants:CDY39973 |
| ProteinID:CDY39973 | ProteinID:CDY39973.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0008270 | EnsemblPlantsGene:GSBRNA2T00068859001 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR001878 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00098 | PFAM:PF00270 | PFAM:PF00271 | PFscan:PS50158 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF542 | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00343 | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | SUPFAM:SSF57756 | UniParc:UPI0004EEB511 | InterPro:Znf_CCHC | InterPro:Znf_CCHC_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaC06g40510DBnaC06g40510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HT98]
Coordinates
chrLK032461:+:140697..143127
Molecular Weight (calculated)
57903.0 Da
IEP (calculated)
8.002
GRAVY (calculated)
-0.219
Length
518 amino acids
Sequence
(BLAST)
(BLAST)
001: MELDDDYVEY VPVAKRRAME EQKILQRKGK EMMEHLSDKK TLMSVRELAK GITYTEPLLT GWKPPLRIRK MSRKQMDLIR KQWHIIVSGE DIPPPIKSFQ
101: DMKFEKPILD TLREKGIVQP TPIQVQGLPV ILSGRDMIGI AFTGSGKTMV FVLPMIMIAL QEEMMMPIGP GEGPIGLIAG YAPLRSLLCI GGVDMRSQLD
201: VVKRGVHIVV ATPGRLKDLL AKKKMNLDAC RYLTLDEADR LVDLGFEDDI REVFDHFKSQ RQTLLFSATM PTKIQIFARS ALVKPVTVNV GRAGAANLDV
301: IQEVEYVKQE AKIVYLLECL QKTSPPVLIF CENKADVDDI HEYLLLKGVE AVAIHGGKDQ EDREYAISSF KAGKKDVLVA TDIASKGLDF PDIQHVINYD
401: MPAEIENYVH RIGRTGRCGK TGIATTFINK NQSETTLLDL KHLLQEAKQR IPPVLAELKD PMEEAENIAN ASGVKGCAYC GGLGHRIRDC PKLEQQKSVA
501: ISNSRKDYFG SGGYRGEI
101: DMKFEKPILD TLREKGIVQP TPIQVQGLPV ILSGRDMIGI AFTGSGKTMV FVLPMIMIAL QEEMMMPIGP GEGPIGLIAG YAPLRSLLCI GGVDMRSQLD
201: VVKRGVHIVV ATPGRLKDLL AKKKMNLDAC RYLTLDEADR LVDLGFEDDI REVFDHFKSQ RQTLLFSATM PTKIQIFARS ALVKPVTVNV GRAGAANLDV
301: IQEVEYVKQE AKIVYLLECL QKTSPPVLIF CENKADVDDI HEYLLLKGVE AVAIHGGKDQ EDREYAISSF KAGKKDVLVA TDIASKGLDF PDIQHVINYD
401: MPAEIENYVH RIGRTGRCGK TGIATTFINK NQSETTLLDL KHLLQEAKQR IPPVLAELKD PMEEAENIAN ASGVKGCAYC GGLGHRIRDC PKLEQQKSVA
501: ISNSRKDYFG SGGYRGEI
001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I
Arabidopsis Description
RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.