CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47978	Canola	plastid	79.83	88.04
CDX67752	Canola	cytosol	99.35	72.35
Bra003343.1-P	Field mustard	cytosol	98.92	70.92
CDY49232	Canola	cytosol	93.28	68.8
CDX71944	Canola	cytosol	93.93	68.3
AT3G58570.1	Thale cress	cytosol	95.44	68.11
CDY14843	Canola	cytosol, plastid	80.48	60.62
CDX67749	Canola	cytosol	78.74	60.3
CDX71948	Canola	cytosol	77.87	60.13
CDX98301	Canola	cytosol	77.87	59.73
CDY06034	Canola	cytosol	74.4	59.65
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	78.52	58.2
Solyc03g052980.2.1	Tomato	nucleus	74.4	56.05
KRH38030	Soybean	endoplasmic reticulum	73.75	55.65
KRH71800	Soybean	plastid	73.54	55.48
PGSC0003DMT400002828	Potato	cytosol	74.19	55.34
HORVU4Hr1G031280.1	Barley	cytosol, plastid	71.58	54.91
TraesCS4B01G126000.1	Wheat	cytosol, plastid	71.58	54.91
TraesCS4D01G148700.1	Wheat	golgi	71.58	54.91
Os11t0599500-00	Rice	nucleus, plasma membrane	73.75	54.57
Zm00001d048924_P001	Maize	plasma membrane	71.8	54.44
KXG28851	Sorghum	cytosol, plastid	71.8	52.96
CDX88990	Canola	cytosol, plastid	61.61	50.9
TraesCS4A01G141400.1	Wheat	plastid	71.37	50.15
CDX84672	Canola	cytosol	33.41	34.45
CDY02459	Canola	cytosol	34.49	31.86
CDY10596	Canola	nucleus	34.49	31.86
CDY48128	Canola	cytosol	38.18	29.63
CDY16735	Canola	cytosol	37.96	29.61
CDY00570	Canola	nucleus	38.18	29.0
CDY65864	Canola	nucleus	33.19	28.65
CDY66221	Canola	nucleus	33.19	28.54
CDY41747	Canola	nucleus	33.19	28.33
CDX91036	Canola	cytosol	39.7	26.75
CDY53786	Canola	nucleus	34.06	26.61
CDX87315	Canola	cytosol	29.72	26.45
CDY37696	Canola	nucleus	33.84	26.44
CDY61276	Canola	cytosol	29.72	26.4
CDY38671	Canola	cytosol	29.72	26.4
CDX67949	Canola	cytosol	31.02	26.29
CDY39973	Canola	cytosol	29.5	26.25
CDX91943	Canola	cytosol	36.88	25.56
CDX83333	Canola	nucleus	35.14	25.43
CDY28671	Canola	cytosol	36.44	25.34
CDX74304	Canola	cytosol	36.88	24.71
CDY72529	Canola	cytosol	33.19	24.56
CDX85591	Canola	cytosol	39.7	24.34
CDX79541	Canola	nucleus	32.75	24.01
CDX80096	Canola	cytosol	36.88	23.35
CDY37796	Canola	cytosol	36.88	23.16
CDX95719	Canola	cytosol	36.66	22.99
CDX84112	Canola	nucleus	13.45	20.67
CDX74101	Canola	cytosol	36.88	19.41
CDY08048	Canola	nucleus	36.88	19.32
CDX79384	Canola	cytosol	15.84	18.72
CDY44720	Canola	nucleus	34.27	18.29
CDY41597	Canola	nucleus	27.77	16.56
CDY31513	Canola	nucleus	34.49	14.38
CDX91039	Canola	cytosol	0.0	0.0
CDX91037	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078EBY1	EnsemblPlants:CDX98304	ProteinID:CDX98304	ProteinID:CDX98304.1
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00105845001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0004EEA872	SEG:seg	:

Description

BnaC06g16650D

Coordinates

chrLK031904:+:456994..459683

Molecular Weight (calculated)

49581.0 Da

IEP (calculated)

9.127

GRAVY (calculated)

-0.356

Length

461 amino acids

Sequence
(BLAST)

001: MACAQTGSGK TAAFCFPIIS GIMKEQQRVE RPRGVRGVYP LAVILSPTRE LACQIHDEAR KFSYQTGVKV VVAYGGTPVN QQIRELERGV DILVATPGRL
101: NDLLERGRVS LQMVKHLALD EADRMLDMGF EPQIRKIVQQ MDMPPPGVRQ TMLFSATFPR EIQRLASDFL SNYIFLAVGR VGSSTDLIVQ RVEFVHDSDK
201: RSHLMDLLHA QRENGNQGKQ ALTLVFVETK KGADSLENWL CMNGFPATTI HGDRSQQERE MALRSFKTGR TPILVATDVA ARGLDIPHVA HVVNFDLPND
301: IDDYVHRIGR TGRAGNSGLA TAFFNDNNTS MAKPLAELMQ EANQEVPDWL SRYASRASFG GGKNRRSGGR FGGRDFRRES FGQGGGGGGG YYGGGGGGYG
401: AVPGGGYGAM PGGYGNVPGG GYGAVPGGYV PYGRGGGAYY GGGYGTVPNQ GYGPGVASAW D

Best Arabidopsis Sequence Match ( AT3G58570.1 )
(BLAST)

001: MSSNSWADVS ESERAPSGGG WGYSRPSRTN YVPPHLRSRT PSSEFVAPSP GNNDRGGYGG ANSGYGGRGQ GYGGRGSGYG GRGGPVGGWN ARSGGWDRRD
101: TETNPFGNDG NADPAVNEQE NTVINFEAYE DIPIETSGDN VPPPVNTFAE IDLGEALNLN IQRCKYVKPT PVQRNAIPIL AAGRDLMACA QTGSGKTAAF
201: CFPIISGIMK DQHIERPRGV RGVYPLAVIL SPTRELACQI HDEARKFSYQ TGVKVVVAYG GTPVNQQIRE LERGVDILVA TPGRLNDLLE RGRVSLQMVR
301: FLALDEADRM LDMGFEPQIR KIVQQMDMPP PGVRQTMLFS ATFPREIQRL ASDFLSNYIF LAVGRVGSST DLIVQRVEFV HDSDKRSHLM DLLHAQRENG
401: NQGKQALTLV FVETKKGADS LENWLCINGF PATTIHGDRS QQEREVALRS FKTGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: NSGLATAFFN DNNTTMAKPL AELMQEANQE VPDWLTRYAS RASFGGGKNR RSGGRFGGRD FRRESFSRGG GGADYYGGGG GYGGVPGGGY GAMPGGYGPV
601: PGGGYGNVPG GGYAPYGRGG GAYYGPGGYG TVPNQGYGPG VASAWD

Arabidopsis Description

RH52DEAD-box ATP-dependent RNA helicase 52 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2F9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.