CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY02459	Canola	cytosol	99.2	99.2
AT1G55150.2	Thale cress	cytosol	91.58	86.88
Solyc12g044860.1.1	Tomato	nucleus	80.96	84.34
PGSC0003DMT400083878	Potato	cytosol	84.17	83.83
GSMUA_Achr10P...	Banana	cytosol	83.17	83.5
KRH47127	Soybean	nucleus	84.77	83.43
KXG31614	Sorghum	cytosol	82.16	83.33
KRH44155	Soybean	cytosol	83.97	82.64
Os01t0197200-01	Rice	plasma membrane	81.76	82.59
VIT_09s0002g02100.t01	Wine grape	cytosol	83.97	81.36
TraesCS3A01G103700.1	Wheat	cytosol	80.56	81.05
TraesCS3D01G106000.1	Wheat	cytosol	80.56	81.05
TraesCS3B01G121100.1	Wheat	cytosol	79.16	80.94
KRH48684	Soybean	cytosol, endoplasmic reticulum	72.34	75.84
Zm00001d039452_P002	Maize	cytosol	81.56	73.6
HORVU3Hr1G018850.7	Barley	cytosol	77.15	70.38
CDY16735	Canola	cytosol	65.93	55.67
CDY48128	Canola	cytosol	66.13	55.56
CDY47978	Canola	plastid	31.46	37.56
CDY65864	Canola	nucleus	39.08	36.52
CDY41747	Canola	nucleus	39.48	36.48
CDX84672	Canola	cytosol	32.67	36.47
CDY66221	Canola	nucleus	39.08	36.38
CDY28671	Canola	cytosol	46.29	34.84
CDX91943	Canola	cytosol	46.29	34.74
CDX98304	Canola	cytosol, plastid	31.86	34.49
CDX74304	Canola	cytosol	46.29	33.58
CDX83333	Canola	nucleus	41.48	32.5
CDX91036	Canola	cytosol	44.49	32.46
CDX84112	Canola	nucleus	19.24	32.0
CDY06034	Canola	cytosol	35.67	30.96
CDX87315	Canola	cytosol	32.06	30.89
CDY38671	Canola	cytosol	32.06	30.83
CDY61276	Canola	cytosol	32.06	30.83
CDX67949	Canola	cytosol	33.47	30.7
CDY39973	Canola	cytosol	31.86	30.7
CDX85591	Canola	cytosol	45.09	29.92
CDY72529	Canola	cytosol	37.27	29.86
CDX71948	Canola	cytosol	35.27	29.48
CDX67749	Canola	cytosol	35.47	29.4
CDX98301	Canola	cytosol	35.27	29.28
CDY37696	Canola	nucleus	34.47	29.15
CDX80096	Canola	cytosol	42.28	28.98
CDY53786	Canola	nucleus	34.27	28.98
CDY37796	Canola	cytosol	42.48	28.88
CDX95719	Canola	cytosol	42.48	28.84
CDY14843	Canola	cytosol, plastid	35.27	28.76
CDY49232	Canola	cytosol	35.67	28.48
CDX67752	Canola	cytosol	35.67	28.12
CDX71944	Canola	cytosol	35.67	28.08
CDX74101	Canola	cytosol	45.49	25.91
CDY08048	Canola	nucleus	45.49	25.8
CDX79541	Canola	nucleus	32.26	25.6
CDX88990	Canola	cytosol, plastid	27.05	24.19
CDY44720	Canola	nucleus	40.48	23.38
CDX79384	Canola	cytosol	18.24	23.33
CDY41597	Canola	nucleus	34.27	22.12
CDY31513	Canola	nucleus	38.28	17.27
CDY00570	Canola	nucleus	19.44	15.98
CDX91039	Canola	cytosol	4.21	12.0
CDX91037	Canola	cytosol	4.21	12.0

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	GO:A0A078FB31	UniProt:A0A078FB31	EnsemblPlants:CDY10596	ProteinID:CDY10596
ProteinID:CDY10596.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00032574001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0001B83732	SEG:seg	:	:	:	:

Description

BnaC03g70180DBnaC03g70180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FB31]

Coordinates

chrLK032004:-:729322..732698

Molecular Weight (calculated)

55215.8 Da

IEP (calculated)

9.517

GRAVY (calculated)

-0.457

Length

499 amino acids

Sequence
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGASAYG SSASKRESSS VGDESPKKPD LDGLTPFEKN FYVESPSVAA MTEAEVEEYR KKREITVEGR DIPKPVKSFR
101: DVGFPDYVLE EVKKAGFTEP TPIQSQGWPM ALKGRDLIGI AETGSGKTLS YLLPAIVHVN AQPILAPGDG PIVLVLAPTR ELAVQIQQEA SKFGSSSKIK
201: STCIYGGVPK GPQVRDLQKG VEIVIATPGR LIDMMESNNT NLRRVTYLVL DEADRMLDMG FDPQIRKIVS HIRPDRQTLY WSATWPKEVE QLSKKFLYNP
301: YKVIIGSSDL KANRAIRQIV DVISESQKYN KLVKLLEDIM DGSRILVFLD TKKGCDQITR QLRMDGWPAL SIHGDKSQAE RDWVLSEFRS GKSPIMTATD
401: VAARGLDVKD VKYVINYDFP GSLEDYVHRI GRTGRAGAKG TAYSFFTAAN ARFAKELISI LEEAGQKVSH ELASMGRSTA PPPPGLGGFR DRGSRRAWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.