Factsheet for Os01t0197200-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG31614	Sorghum	cytosol	95.95	96.34
TraesCS3A01G103700.1	Wheat	cytosol	95.14	94.76
TraesCS3D01G106000.1	Wheat	cytosol	94.94	94.56
TraesCS3B01G121100.1	Wheat	cytosol	92.92	94.06
GSMUA_Achr10P...	Banana	cytosol	87.85	87.32
Zm00001d039452_P002	Maize	cytosol	95.75	85.53
Solyc12g044860.1.1	Tomato	nucleus	82.59	85.18
PGSC0003DMT400083878	Potato	cytosol	85.43	84.23
VIT_09s0002g02100.t01	Wine grape	cytosol	85.83	82.33
KRH44155	Soybean	cytosol	84.21	82.05
KRH47127	Soybean	nucleus	84.21	82.05
CDY10596	Canola	nucleus	82.59	81.76
Bra030884.1-P	Field mustard	nucleus	82.39	81.56
CDY02459	Canola	cytosol	82.39	81.56
HORVU3Hr1G018850.7	Barley	cytosol	89.47	80.8
KRH48684	Soybean	cytosol, endoplasmic reticulum	72.47	75.21
AT1G55150.2	Thale cress	cytosol	79.35	74.52
Os01t0911100-01	Rice	nucleus, plastid	58.91	61.01
Os07t0301200-01	Rice	cytosol	40.28	38.87
Os02t0150100-02	Rice	cytosol	34.01	36.52
Os06t0602400-01	Rice	nucleus, plasma membrane	35.43	36.16
Os01t0172200-01	Rice	cytosol	48.99	31.88
Os01t0549400-01	Rice	nucleus	50.4	31.44
Os03t0805200-01	Rice	plastid	38.06	29.51
Os07t0202100-01	Rice	nucleus	37.45	29.0
Os03t0308500-01	Rice	mitochondrion	45.14	28.96
Os11t0599500-00	Rice	nucleus, plasma membrane	36.44	28.89
Os06t0697200-00	Rice	cytosol	35.22	28.11
Os08t0154225-00	Rice	cytosol	33.81	28.07
Os03t0708600-02	Rice	nucleus	36.03	24.18
Os02t0150000-00	Rice	mitochondrion	8.3	23.7
Os08t0159900-01	Rice	extracellular, nucleus	42.51	20.02
Os08t0154200-01	Rice	cytosol, nucleus	0.2	0.47
Os01t0911000-01	Rice	nucleus	0.2	0.3

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EntrezGene:9268869	ProteinID:BAD73320.1	ProteinID:BAF04212.1	ProteinID:BAS70871.1
EMBL:CM000138	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000184	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	GO:GO:0042254	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0197200	EnsemblPlants:Os01t0197200-01	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	UniProt:Q5QMN3	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00000AB653	RefSeq:XP_015611419.1	SEG:seg	:	:

Description

RNA helicase 20Similar to predicted protein. (Os01t0197200-01)

Coordinates

chr1:-:5247340..5251192

Molecular Weight (calculated)

54677.2 Da

IEP (calculated)

8.534

GRAVY (calculated)

-0.403

Length

494 amino acids

Sequence
(BLAST)

001: MSRFDGRAAD PGSYRDRRSE GAFGGGTRAF APTSKADSAA AAADLDGLPR FEKNFYVESP SVAGMTEEEV EAYRRRREIT VEGRDVPKPV REFRDVGFPE
101: YVLQEITKAG FVEPTPIQSQ GWPMALRGRD LIGIAETGSG KTLAYLLPAI VHVNAQPILA PGDGPIVLVL APTRELAVQI QQEATKFGAS SKIKSTCIYG
201: GVPKGPQVRD LQKGVEIVIA TPGRLIDMIE SHHTNLRRVT YLVLDEADRM LDMGFEPQIK KIVSQIRPDR QTLYWSATWP KEVEQLARNF LFDPYKVIIG
301: SEELKANHAI SQHVEILSES QKYNKLVNLL EDIMDGSRIL IFMDTKKGCD QITRQLRMDG WPALSIHGDK SQAERDWVLS EFKSGKSPIM TATDVAARGL
401: DVKDVKYVIN YDFPGSLEDY VHRIGRTGRA GAKGTAYTFF TAANARFAKD LINILEEAGQ KVSPELANMG RGAPPPSSGH RDRYRGYGGG RSWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.