Factsheet for Os01t0911100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 23303719
plastid: 27992503

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0197200-01	Rice	plasma membrane	61.01	58.91
Os07t0301200-01	Rice	cytosol	32.49	30.27
Os02t0150100-02	Rice	cytosol	26.62	27.61
Os08t0154225-00	Rice	cytosol	34.38	27.56
Os06t0602400-01	Rice	nucleus, plasma membrane	27.46	27.07
Os01t0172200-01	Rice	cytosol	41.3	25.96
Os03t0805200-01	Rice	plastid	33.54	25.12
Os07t0202100-01	Rice	nucleus	33.33	24.92
Os11t0599500-00	Rice	nucleus, plasma membrane	32.29	24.72
Os01t0549400-01	Rice	nucleus	40.88	24.62
Os03t0308500-01	Rice	mitochondrion	37.95	23.51
Os06t0697200-00	Rice	cytosol	28.09	21.65
Os02t0150000-00	Rice	mitochondrion	7.13	19.65
Os03t0708600-02	Rice	nucleus	29.77	19.29
Os08t0159900-01	Rice	extracellular, nucleus	36.9	16.78
Os01t0911000-01	Rice	nucleus	0.63	0.9
Os08t0154200-01	Rice	cytosol, nucleus	0.0	0.0

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	UniProt:A0A0P0VC15	ProteinID:BAS75838.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0000184	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824
GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
GO:GO:0042254	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlantsGene:Os01g0911100	EnsemblPlants:Os01t0911100-01	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI000049EA14	SEG:seg	:

Description

RNA helicase 30Similar to DEAD box RNA helicase1. (Os01t0911100-01);Similar to DEAD box RNA helicase1. (Os01t0911100-02)

Coordinates

chr1:-:39688395..39692555

Molecular Weight (calculated)

51824.3 Da

IEP (calculated)

9.677

GRAVY (calculated)

-0.341

Length

477 amino acids

Sequence
(BLAST)

001: MNPYDLRYAD PSSYRDRRSD LAGAPVLAAS APAAANPYAA AYAPAPAAPV APAGGDFSRF GGRGRGGGAG GGGWGRGGGG GGGAGGYRGG GGRGGGRDAL
101: DSLSLPKPDF RSLIPFEKNF YVECPAVQAM SDMDVSQYRR QRDITVEGHD VPKPVRYFQE ANFPDYCMQA IAKSGFVEPT PIQSQGWPMA LKGRDMIGIA
201: QTGSGKTLSY LLPGLVHVGA QPRLEQGDGP IVLILAPTRE LAVQIQQESG KFGSYSRTRS TCIYGGAPKG PQIRDLRRGV EIVIATPGRL IDMLEGGHTN
301: LRRVTYLVLD EADRMLDMGF EPQIRKIVAQ IRPDRQTLYW SATWPREVES LARQFLQNPY KVIIGSPDLK ANHSIQQIIE VISEHEKYPR LSKLLSDLMD
401: GSRILIFFQT KKDCDKVTRQ LRMDGWPALS IHGDKAQAER DYVLAEFKSG KSPIMAATDV AARGLGMVTC LKIRIRL

Best Arabidopsis Sequence Match ( AT5G63120.5 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLGRINCD TQ

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.