Factsheet for Os03t0308500-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	90.13	90.6
TraesCS4A01G121700.1	Wheat	mitochondrion	89.74	90.09
TraesCS4B01G181800.1	Wheat	nucleus	89.35	89.82
Zm00001d047633_P002	Maize	nucleus	88.83	89.06
Zm00001d028898_P011	Maize	cytosol	88.05	88.05
TraesCS4D01G184200.1	Wheat	mitochondrion	89.48	87.33
HORVU4Hr1G053550.2	Barley	mitochondrion	88.83	86.15
GSMUA_Achr1P24870_001	Banana	cytosol	64.42	74.81
GSMUA_Achr1P13000_001	Banana	cytosol	67.14	74.5
VIT_07s0005g01600.t01	Wine grape	cytosol	74.55	74.45
CDX83333	Canola	nucleus	61.04	73.78
KRG96540	Soybean	cytosol, mitochondrion	73.38	73.57
KRH68277	Soybean	nucleus	72.73	71.61
CDX80096	Canola	cytosol	67.4	71.29
Bra004464.1-P	Field mustard	cytosol	67.66	71.17
CDY37796	Canola	cytosol	67.79	71.12
PGSC0003DMT400023277	Potato	cytosol	71.04	70.67
AT2G47330.1	Thale cress	cytosol	69.61	70.53
Solyc01g079330.2.1	Tomato	nucleus	70.78	70.41
CDX95719	Canola	cytosol	66.88	70.07
Bra000447.1-P	Field mustard	cytosol	61.17	69.99
Os01t0197200-01	Rice	plasma membrane	28.96	45.14
Os02t0150100-02	Rice	cytosol	23.64	39.57
Os01t0911100-01	Rice	nucleus, plastid	23.51	37.95
Os08t0154225-00	Rice	cytosol	27.27	35.29
Os06t0602400-01	Rice	nucleus, plasma membrane	21.69	34.5
Os07t0301200-01	Rice	cytosol	22.73	34.18
Os06t0697200-00	Rice	cytosol	26.62	33.12
Os07t0202100-01	Rice	nucleus	25.97	31.35
Os03t0805200-01	Rice	plastid	25.84	31.24
Os11t0599500-00	Rice	nucleus, plasma membrane	25.06	30.98
Os03t0708600-02	Rice	nucleus	25.06	26.22
Os08t0159900-01	Rice	extracellular, nucleus	35.19	25.83
Os01t0172200-01	Rice	cytosol	24.81	25.16
Os02t0150000-00	Rice	mitochondrion	5.58	24.86
Os01t0549400-01	Rice	nucleus	24.94	24.24
Os08t0154200-01	Rice	cytosol, nucleus	1.43	5.14
Os01t0911000-01	Rice	nucleus	0.52	1.19

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4332617	ProteinID:ABF95549.1	EMBL:AK103891	ProteinID:BAF11818.1
ProteinID:BAS83834.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os03g0308500	EnsemblPlants:Os03t0308500-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	UniProt:Q10MH8	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0000DB4994	RefSeq:XP_015633092.1	SEG:seg

Description

RNA helicase 24DEAD-like helicase, N-terminal domain containing protein. (Os03t0308500-01)

Coordinates

chr3:+:10984278..10988399

Molecular Weight (calculated)

83190.0 Da

IEP (calculated)

5.984

GRAVY (calculated)

-0.404

Length

770 amino acids

Sequence
(BLAST)

001: MSKRPKLGGF SIPRPTSYSF ERSQPPQRLY VPADDPDLDD IAFSDDAAAP SDAPPAGGGG AAGDEEEIDP LDAFMAEIQE EIRAPPPAPK PEALRRADSD
101: DEDDPVESFL RAKKDSGLAL AADAMHAGYD SDEEVYAAAK AVDAGMMEYD SDDNPIVVDK KKIEPIPPLD HSTIEYEPFN KDFYEEKPSV SGMSEQEVAD
201: YMKSLAIRVS GFDVPRPIKS FADCGFPVQL MNAIAKQGYE KPTTIQCQAL PIVLSGRDII GIAKTGSGKT AAFVLPMIVH IMDQPELEKE EGPIGVVCAP
301: TRELAHQIYL EAKKFAKPYN LRVAAVYGGV SKFDQFKELK AGCEIVIATP GRLIDLLKMK ALKMFRATYL VLDEADRMFD LGFEPQIRSI VGQIRPDRQT
401: LLFSATMPYK VERLAREILT DPIRVTVGQV GSANEDIKQV VNVLPSDAEK MPWLLEKLPG MIDDGDVLVF AAKKARVDEI ESQLNQRGFR IAALHGDKDQ
501: ASRMETLQKF KSGVYHVLVA TDVAARGLDI KSIKTVVNFD IAKEMDMHIH RIGRTGRAGD KDGTAYTLIT QKEVRFAGEL VHCLIAAGQD VPNELMDLAM
601: KDGRFRANRD SRKGGKKSGK GKGGGGGGGG GSGARGRGRG VRGVDFGLGI GYNAESGSVP APRSAALNSL KTGMMQNFKS SFVSASSSNT PSNSAPSRGA
701: PSSFVRPALR GFVSGGTIGG DANQARAVLP APSFVPASRP AENTVENANP NPESSRDRTR ERKRPSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.