Factsheet for Zm00001d028898_P011

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	95.32	95.82
Zm00001d047633_P002	Maize	nucleus	93.51	93.75
Os03t0308500-01	Rice	mitochondrion	88.05	88.05
TraesCS4A01G121700.1	Wheat	mitochondrion	85.97	86.31
TraesCS4B01G181800.1	Wheat	nucleus	85.71	86.16
TraesCS4D01G184200.1	Wheat	mitochondrion	86.62	84.54
HORVU4Hr1G053550.2	Barley	mitochondrion	85.06	82.49
VIT_07s0005g01600.t01	Wine grape	cytosol	73.77	73.67
CDX83333	Canola	nucleus	60.78	73.47
GSMUA_Achr1P24870_001	Banana	cytosol	63.25	73.45
GSMUA_Achr1P13000_001	Banana	cytosol	66.1	73.34
KRG96540	Soybean	cytosol, mitochondrion	71.69	71.88
KRH68277	Soybean	nucleus	71.69	70.59
CDX80096	Canola	cytosol	66.1	69.92
Bra000447.1-P	Field mustard	cytosol	60.91	69.69
Bra004464.1-P	Field mustard	cytosol	66.23	69.67
CDY37796	Canola	cytosol	66.23	69.48
CDX95719	Canola	cytosol	66.1	69.25
AT2G47330.1	Thale cress	cytosol	68.31	69.21
PGSC0003DMT400023277	Potato	cytosol	69.35	68.99
Solyc01g079330.2.1	Tomato	nucleus	69.09	68.73
Zm00001d039452_P002	Maize	cytosol	28.31	39.42
Zm00001d042416_P002	Maize	extracellular, plasma membrane	27.79	33.54
Zm00001d019449_P004	Maize	nucleus	21.95	33.27
Zm00001d048924_P001	Maize	plasma membrane	25.32	32.07
Zm00001d047502_P001	Maize	extracellular	25.06	31.23
Zm00001d036897_P001	Maize	extracellular	24.55	30.78
Zm00001d007755_P001	Maize	plastid	25.19	29.98
Zm00001d007757_P004	Maize	plastid	25.19	29.31
Zm00001d008725_P003	Maize	cytosol	24.94	27.71
Zm00001d013453_P001	Maize	nucleus	25.58	26.84
Zm00001d033704_P007	Maize	extracellular	25.58	26.69
Zm00001d039673_P002	Maize	cytosol	24.16	26.53
Zm00001d024533_P001	Maize	nucleus	34.55	24.98
Zm00001d011155_P012	Maize	nucleus	24.03	23.63
Zm00001d044510_P002	Maize	mitochondrion	23.9	22.94
Zm00001d007719_P010	Maize	cytosol	27.27	15.52
Zm00001d048632_P001	Maize	cytosol	27.27	15.2

Protein Annotations

EntrezGene:103634567	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A1D6K0I1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONL97294.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00084259CC	EnsemblPlantsGene:Zm00001d028898	EnsemblPlants:Zm00001d028898_P011
EnsemblPlants:Zm00001d028898_T011	SEG:seg	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 24

Coordinates

chr1:+:50140543..50144895

Molecular Weight (calculated)

83982.0 Da

IEP (calculated)

5.813

GRAVY (calculated)

-0.441

Length

770 amino acids

Sequence
(BLAST)

001: MSKRPKLEGF SIPRPTSYNF ERSQSVQRLY RPTDDPDLDD IAFSDDAPSD AQASTAVEGK AENEEEMDPL DAFMAEIQEE IRAPPPPPKP EALRRTDSDD
101: DEDDPVESFL RAKKDAGLTL AADVMRAGYD SDEEVYAAAK AVDAGMMEYD SDDNPIVIDK KKIEPIPALD HSTIEYDAFT KDFYEEKPSI SGEALGMSDQ
201: EVTDYMKSLS IRVSGFDVPR PIKNFEDCGF HVPLMNAIAK QAYEKPTTIQ CQALPIVLSG RDIIGIAKTG SGKTAAFVLP MIVHIMDQPE LEKEEGPIGV
301: ICAPTRELAH QIYLEAKKFA KPYNLRVAAI YGGVSKFDQF KELKAGCEIV IATPGRLIDL LKMKALKMFR ATYLVLDEAD RMFDLGFEPQ IRSIVGQIRP
401: DRQTLLFSAT MPYKVERLAR EILTDPIRVT VGQVGGANED IKQVVNVLPS DVEKMPWLLG KLPGMIDDGD VLVFASKKAR VDEIEKELNQ RGFRIAALHG
501: DKDQASRMET LQKFKSGTFH VLVATDVAAR GLDIKSIKTV VNFDIAKEMD MHIHRIGRTG RAGDKDGTAY TLITQKEAHF AGELVHSLIA AGQDVPNELM
601: DLAMKDGRFR AKRDSRKGGK KGGKGKGGVG GAGRGRGVRG VDFGLGIGYN AESGSQVPAA RSAAVNSLKT GMLQRFKSSF VSGSSNTPSS SAPSFVRPAL
701: RGFVSGGTIG GDTRPAQAAP TFIPASRPAQ PAPAVPASQP AGNNNENGNP NPESSRDQFR ERKRPSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.