Factsheet for PGSC0003DMT400023277

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g079330.2.1	Tomato	nucleus	97.42	97.42
VIT_07s0005g01600.t01	Wine grape	cytosol	81.14	81.45
KRG96540	Soybean	cytosol, mitochondrion	79.33	79.95
CDX83333	Canola	nucleus	65.25	79.28
KRH68277	Soybean	nucleus	79.84	79.03
AT2G47330.1	Thale cress	cytosol	75.58	76.97
GSMUA_Achr1P24870_001	Banana	cytosol	65.37	76.32
CDX95719	Canola	cytosol	71.71	75.51
Bra000447.1-P	Field mustard	cytosol	65.5	75.33
GSMUA_Achr1P13000_001	Banana	cytosol	67.44	75.22
CDX80096	Canola	cytosol	70.67	75.14
Bra004464.1-P	Field mustard	cytosol	70.93	75.0
CDY37796	Canola	cytosol	71.06	74.93
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	70.41	71.15
Os03t0308500-01	Rice	mitochondrion	70.67	71.04
TraesCS4B01G181800.1	Wheat	nucleus	70.03	70.76
TraesCS4A01G121700.1	Wheat	mitochondrion	70.03	70.66
Zm00001d047633_P002	Maize	nucleus	69.77	70.31
Zm00001d028898_P011	Maize	cytosol	68.99	69.35
TraesCS4D01G184200.1	Wheat	mitochondrion	70.28	68.95
HORVU4Hr1G053550.2	Barley	mitochondrion	69.51	67.76
PGSC0003DMT400083878	Potato	cytosol	28.17	43.51
PGSC0003DMT400036663	Potato	cytosol	26.23	34.47
PGSC0003DMT400073340	Potato	cytosol	25.97	34.13
PGSC0003DMT400010921	Potato	cytosol	26.1	33.55
PGSC0003DMT400024026	Potato	nucleus	23.9	33.21
PGSC0003DMT400080614	Potato	nucleus	25.71	32.46
PGSC0003DMT400081851	Potato	cytosol	25.19	32.28
PGSC0003DMT400002828	Potato	cytosol	25.71	32.2
PGSC0003DMT400046821	Potato	cytosol	28.42	30.64
PGSC0003DMT400001391	Potato	cytosol	25.84	27.4
PGSC0003DMT400024330	Potato	cytosol	23.51	27.2
PGSC0003DMT400043101	Potato	nucleus	24.68	27.02
PGSC0003DMT400071932	Potato	cytosol	3.62	25.23
PGSC0003DMT400011665	Potato	nucleus	35.92	24.93

Protein Annotations

EntrezGene:102596658	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M1AI31
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	EnsemblPlantsGene:PGSC0003DMG400009015	PGSC:PGSC0003DMG400009015	EnsemblPlants:PGSC0003DMT400023277
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000295A8BF
RefSeq:XP_006349177.1	RefSeq:XP_015164981.1	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 24 [Source:PGSC_GENE;Acc:PGSC0003DMG400009015]

Coordinates

chr1:+:62850817..62860876

Molecular Weight (calculated)

84446.7 Da

IEP (calculated)

6.088

GRAVY (calculated)

-0.542

Length

774 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGINRQTTYN FERNQAPQRL YVPPSSRSGG SHDNYEDTDL DNIEYDDHEA VGGNNDDGGG GGGEDDEIDP LDAFMEGIHE EMKAAPPPKP
101: KEKLDKYKDD VDDDPMESFL RAKKDVGLQL AADALHAGYN SDEEVYAAAK AVDAGLVEYD SDDNPIVVDK KKIEPITALD HSEIDYEPFN KDFYEEKPSI
201: SGMSDQEVNE YSTSLAIRVS GFDVPRPIKT FEDSGFSVEL MKAISKQGYE KPTPIQCQAL PIVLSGRDII GIAKTGSGKT AAFVLPMIVH IMDQPELQKE
301: EGPIGVICAP TRELAHQIFV EAKKFSKSHG IRVSAVYGGM SKLDQYKELK AGCEIVVATP GRLIDMIRKK AFTMLRATYL VLDEADRMFD LGFEPQIRSI
401: VGQIRPDRQT LLFSATMPRK VEKLAREILT DPVRVTVGEI GTANEDITQI VEVIPSDAEK LPWLLEKLPG LIDNGDVLVF ASKKATVDEI ESQLAQKGFR
501: VAALHGDKDQ VSRTETLQKF KSGIYHVLIA TDVAARGLDI KSLKSVVNYD IAKDMDMHVH RIGRTGRAGD KDGTAYTLIT HKEARFAGEL ANSLVAAGQT
601: VSVELMDLAM KDGRFRSKRD ARKGGGKRAK GRGGGNNKGV RGVDFGLGIG YNPESNNPPQ SAAPSRSAAV NSLRTGMMAQ FKSSFVAASS KSQNQGMNNT
701: EGTFPNKKMV LQGFVSGGTI GGNSNTSHNS STFTAATSGA YTSSQPARDG ANQKSSESSK EKSRERRRPS GWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.