Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g098700.1.1 | Tomato | nucleus | 98.12 | 95.38 |
| CDY72529 | Canola | cytosol | 41.79 | 74.8 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 73.18 | 71.14 |
| KRH77709 | Soybean | nucleus | 67.98 | 68.66 |
| KRH27757 | Soybean | nucleus | 67.98 | 68.47 |
| AT3G09620.2 | Thale cress | nucleus | 60.09 | 67.68 |
| AT1G20920.3 | Thale cress | nucleus | 68.25 | 65.27 |
| CDY31513 | Canola | nucleus | 64.66 | 65.19 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 61.17 | 65.01 |
| Bra025856.1-P | Field mustard | nucleus | 67.8 | 64.56 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 47.44 | 64.12 |
| EES14596 | Sorghum | nucleus | 60.0 | 62.99 |
| Zm00001d024533_P001 | Maize | nucleus | 60.0 | 62.82 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 59.91 | 62.66 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 59.73 | 62.65 |
| CDY44720 | Canola | nucleus | 48.43 | 62.5 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 57.31 | 62.22 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 59.55 | 61.94 |
| CDY41597 | Canola | nucleus | 42.78 | 61.71 |
| Bra029779.1-P | Field mustard | nucleus | 48.88 | 61.44 |
| OQU79814 | Sorghum | nucleus | 53.36 | 60.28 |
| GSMUA_Achr10P... | Banana | cytosol | 53.45 | 59.54 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 51.66 | 56.64 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 49.33 | 53.97 |
| PGSC0003DMT400083878 | Potato | cytosol | 19.01 | 42.32 |
| PGSC0003DMT400023277 | Potato | cytosol | 24.93 | 35.92 |
| PGSC0003DMT400036663 | Potato | cytosol | 17.94 | 33.96 |
| PGSC0003DMT400073340 | Potato | cytosol | 17.67 | 33.45 |
| PGSC0003DMT400081851 | Potato | cytosol | 17.76 | 32.78 |
| PGSC0003DMT400010921 | Potato | cytosol | 17.31 | 32.06 |
| PGSC0003DMT400024026 | Potato | nucleus | 15.87 | 31.78 |
| PGSC0003DMT400002828 | Potato | cytosol | 16.95 | 30.58 |
| PGSC0003DMT400080614 | Potato | nucleus | 16.05 | 29.2 |
| PGSC0003DMT400046821 | Potato | cytosol | 18.74 | 29.11 |
| PGSC0003DMT400043101 | Potato | nucleus | 17.85 | 28.15 |
| PGSC0003DMT400024330 | Potato | cytosol | 15.96 | 26.61 |
| PGSC0003DMT400001391 | Potato | cytosol | 17.13 | 26.16 |
| PGSC0003DMT400071932 | Potato | cytosol | 2.51 | 25.23 |
Protein Annotations
| EntrezGene:102600584 | MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M0ZZY5 | InterPro:P-loop_NTPase | PFAM:PF00270 |
| PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400004585 | PGSC:PGSC0003DMG400004585 | EnsemblPlants:PGSC0003DMT400011665 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000295BE22 | RefSeq:XP_006349887.1 | SEG:seg |
Description
Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400004585]
Coordinates
chr12:+:59520252..59526095
Molecular Weight (calculated)
126382.0 Da
IEP (calculated)
6.099
GRAVY (calculated)
-0.972
Length
1115 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEELKHKSKR EDESKKRHRD KEDRDREKKD RDHHHRDKKD REREKSSRYE REKSADRDRA KHKDRHSRGD KEREKSSKVR DDDERPRDKV KEREKDKEDR
0101: EEREREKERE REKERERERK RDRERREREK EKERNREKDR HREVYEKGSD DEVDAKDRER KRRKRDNDDH HKERDRERSS RPNNRLREES TDEVSAEKDQ
0201: KSREEDLAEE QRKLDDEMEK RRRRVQEWQE LKRKKEESER ETLGVDAGAE EPKLGKTWTL DGESDDEDAE GKTGMDIDMD DSGKVMDDEI GADKVVSSSI
0301: GSDSPVIQNG GDGLVDDDEI DPLDAFMNDM VLPEVEKLNK SVVNSLDGEN SSLKEKNGLR KEEKPKMSMK KTMGRIIPGE DSDSDYGNVE NDEDPLEEED
0401: DEEFMKRVKK TKAEKLSLVD HSKIEYPPFR KNFYIEVKEI SRISAEEVST YRKQLELKIH GKDVPKPIKT WHQTGLSSKM LDTIKKLNYE KPMSIQAQAL
0501: PVIMSGRDCI GIAKTGSGKT LAFVLPMLRH IKDQPPLMSG DGPIGLIMAP TRELVQQIHS DIKKFARVMG LTCVPVYGGS GVAQQISELK RGAEIVVCTP
0601: GRMIDILCTS GGKITNLRRV TYLVMDEADR MFDMGFEPQI TRIVQNTRPD RQTVLFSATF PRQVEILARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES
0701: DRFLRLLELL GEWYEKGKIL IFVHTQEKCD ALFRDMIKHG YPCLSLHGAK DQTDRESTIS DFKSNVCNLL IATSIAARGL DVKELELVIN YDVPNHYEDY
0801: VHRVGRTGRA GKKGCAITFI SEDDARYAPD LLKALQLSEQ VVPDDLKALA DGFMAKVNQG LEQAHGTGYG GSGFKFNEEE DEVRRAAKKA QAKEYGFEED
0901: KSDSEDEDEG IRKAGGDLSQ QAALAQAAAL VAASKASMAS AAAPVSAGQL LPNGGLPVAL PGVLGINIPG ATAVAAGNGL SIGSNDVTAR ATALAAALNL
1001: QHNLAKIQAD AMPEHYEAEL EINDFPQNAR WKVTHKETLG PISEWTGAAI TTRGQYVPPG KVPGFGERKL YLFIEGPTEQ SVKRAKAELK RVLEDITMQA
1101: SSLPGSAQPG RYSVV
0101: EEREREKERE REKERERERK RDRERREREK EKERNREKDR HREVYEKGSD DEVDAKDRER KRRKRDNDDH HKERDRERSS RPNNRLREES TDEVSAEKDQ
0201: KSREEDLAEE QRKLDDEMEK RRRRVQEWQE LKRKKEESER ETLGVDAGAE EPKLGKTWTL DGESDDEDAE GKTGMDIDMD DSGKVMDDEI GADKVVSSSI
0301: GSDSPVIQNG GDGLVDDDEI DPLDAFMNDM VLPEVEKLNK SVVNSLDGEN SSLKEKNGLR KEEKPKMSMK KTMGRIIPGE DSDSDYGNVE NDEDPLEEED
0401: DEEFMKRVKK TKAEKLSLVD HSKIEYPPFR KNFYIEVKEI SRISAEEVST YRKQLELKIH GKDVPKPIKT WHQTGLSSKM LDTIKKLNYE KPMSIQAQAL
0501: PVIMSGRDCI GIAKTGSGKT LAFVLPMLRH IKDQPPLMSG DGPIGLIMAP TRELVQQIHS DIKKFARVMG LTCVPVYGGS GVAQQISELK RGAEIVVCTP
0601: GRMIDILCTS GGKITNLRRV TYLVMDEADR MFDMGFEPQI TRIVQNTRPD RQTVLFSATF PRQVEILARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES
0701: DRFLRLLELL GEWYEKGKIL IFVHTQEKCD ALFRDMIKHG YPCLSLHGAK DQTDRESTIS DFKSNVCNLL IATSIAARGL DVKELELVIN YDVPNHYEDY
0801: VHRVGRTGRA GKKGCAITFI SEDDARYAPD LLKALQLSEQ VVPDDLKALA DGFMAKVNQG LEQAHGTGYG GSGFKFNEEE DEVRRAAKKA QAKEYGFEED
0901: KSDSEDEDEG IRKAGGDLSQ QAALAQAAAL VAASKASMAS AAAPVSAGQL LPNGGLPVAL PGVLGINIPG ATAVAAGNGL SIGSNDVTAR ATALAAALNL
1001: QHNLAKIQAD AMPEHYEAEL EINDFPQNAR WKVTHKETLG PISEWTGAAI TTRGQYVPPG KVPGFGERKL YLFIEGPTEQ SVKRAKAELK RVLEDITMQA
1101: SSLPGSAQPG RYSVV
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.