Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES14596 | Sorghum | nucleus | 72.44 | 67.33 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 56.13 | 67.15 |
| CDY72529 | Canola | cytosol | 42.25 | 66.93 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 70.72 | 65.66 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 70.11 | 64.92 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 70.42 | 64.83 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 66.97 | 64.36 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 61.7 | 59.88 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 60.99 | 59.08 |
| CDY44720 | Canola | nucleus | 50.05 | 57.18 |
| AT3G09620.2 | Thale cress | nucleus | 56.94 | 56.77 |
| KRH77709 | Soybean | nucleus | 63.32 | 56.61 |
| KRH27757 | Soybean | nucleus | 63.32 | 56.46 |
| Bra029779.1-P | Field mustard | nucleus | 50.46 | 56.14 |
| CDY41597 | Canola | nucleus | 43.77 | 55.89 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 62.21 | 53.53 |
| PGSC0003DMT400011665 | Potato | nucleus | 60.28 | 53.36 |
| CDY31513 | Canola | nucleus | 59.07 | 52.71 |
| Solyc12g098700.1.1 | Tomato | nucleus | 60.79 | 52.31 |
| AT1G20920.3 | Thale cress | nucleus | 61.7 | 52.23 |
| Bra025856.1-P | Field mustard | nucleus | 61.6 | 51.92 |
| GSMUA_Achr10P... | Banana | cytosol | 52.18 | 51.45 |
| KXG31614 | Sorghum | cytosol | 21.07 | 42.28 |
| EES04084 | Sorghum | cytosol | 21.58 | 36.85 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 26.44 | 34.07 |
| EER96257 | Sorghum | cytosol | 17.63 | 33.98 |
| EER92293 | Sorghum | cytosol | 19.25 | 30.74 |
| OQU76674 | Sorghum | cytosol | 17.33 | 30.16 |
| KXG28851 | Sorghum | cytosol, plastid | 18.64 | 29.44 |
| KXG37329 | Sorghum | cytosol, plastid | 18.74 | 29.13 |
| KXG34634 | Sorghum | plastid | 18.95 | 28.95 |
| OQU83862 | Sorghum | nucleus | 18.64 | 28.66 |
| OQU86230 | Sorghum | cytosol | 19.66 | 27.13 |
| KXG37746 | Sorghum | nucleus | 20.77 | 25.37 |
| KXG32714 | Sorghum | nucleus | 19.05 | 23.77 |
| OQU84042 | Sorghum | cytosol | 20.87 | 14.84 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EntrezGene:8074046 | UniProt:A0A1Z5R7R5 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:OQU79814 | ProteinID:OQU79814 | ProteinID:OQU79814.1 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | EnsemblPlantsGene:SORBI_3007G023800 | SUPFAM:SSF52540 | UniParc:UPI000B8BB28E | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr7:-:2139044..2143357
Molecular Weight (calculated)
112004.0 Da
IEP (calculated)
6.262
GRAVY (calculated)
-0.775
Length
987 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGDDNDRD RDRDRDRNRD RDRDRSSSRH HRDRHHERSS SHHRRDDRDF DWDRGRDRRH RGEKDRDRDE QEREWAPRRE ERRDRERSRR RDADEEYDDS
101: GRDRKRHRVS SHHHRRDTEP EAAPATKDQE GGMRDEQQRL DDEMERRRIR VKDWQEKRRK QQGASGAGPE AGGGAVAGKK WTLEGEDSDE EADGTDLGGS
201: SVMDVDFNNG GNATSGPTDA DEEEIDPLDA FMNTMVLPEV AMLERNAASV DSVPASNAVA KKGLKKGTGR IMQGDDSDSD YEDVGDDVGA GLEDEDDEEF
301: MKRVKKTKME KLGVVDHSKI DYQPFQKNFY IEAKDIREMT SEEVAVYRKE LELKVHGKDV PKPIKTWLQS GQTSKLLDTI KKLGFEKPMP IQAQALPVIM
401: SGRDCIGVAK TGSGKTLAFL LPMLRHVKDQ PPVAPGDGPV GLIVAPTREL VVQIYLDIKK FSKVLGISCV AVYGGSGVAQ QISELKRGAE IVVCTPGRMI
501: DILCTSNGKI TNLRRVTFLV MDEADRMFDM GFEPQITRII QNIRRDRQTV LFSATFPRQV EMLARKVLIK PVEIQVGGRS VVNKDITQVV EVRPESERFL
601: RLLELLGKWC DKGKILVFVH TQDKCDSLLK NLFQHGYQCL SLHGGKDQAD RESTVADFKS NICSLLIATS VAARGLDVKE LELVVNYDVP NHYEDYVHRV
701: GRTGRAGRKG SAVTFISEEE ERYAPDLVKA LELSEQTVPD DLKALADRFM AKVKQGTERT HGTGYGGSGF KFNEEEDEAR KFTKKAQAME YGYEEEKSDS
801: DFDEEEVHKA GDDLDVQAVG EPSTNDEARL HALEALARIQ RHAVPDHYEA ELEINDFPQH ARWRITHKDT LGPIQEGGVA ITIRGTYIAQ GKIVGANERK
901: LYLFIEGHSE SCVKKAKAEL KRVLEDCVNQ VNFSCWCMGI RGKKLTMVCM PTMVSMACYF QYSDCPRLWR CATLFPNRVI IRQLMFT
101: GRDRKRHRVS SHHHRRDTEP EAAPATKDQE GGMRDEQQRL DDEMERRRIR VKDWQEKRRK QQGASGAGPE AGGGAVAGKK WTLEGEDSDE EADGTDLGGS
201: SVMDVDFNNG GNATSGPTDA DEEEIDPLDA FMNTMVLPEV AMLERNAASV DSVPASNAVA KKGLKKGTGR IMQGDDSDSD YEDVGDDVGA GLEDEDDEEF
301: MKRVKKTKME KLGVVDHSKI DYQPFQKNFY IEAKDIREMT SEEVAVYRKE LELKVHGKDV PKPIKTWLQS GQTSKLLDTI KKLGFEKPMP IQAQALPVIM
401: SGRDCIGVAK TGSGKTLAFL LPMLRHVKDQ PPVAPGDGPV GLIVAPTREL VVQIYLDIKK FSKVLGISCV AVYGGSGVAQ QISELKRGAE IVVCTPGRMI
501: DILCTSNGKI TNLRRVTFLV MDEADRMFDM GFEPQITRII QNIRRDRQTV LFSATFPRQV EMLARKVLIK PVEIQVGGRS VVNKDITQVV EVRPESERFL
601: RLLELLGKWC DKGKILVFVH TQDKCDSLLK NLFQHGYQCL SLHGGKDQAD RESTVADFKS NICSLLIATS VAARGLDVKE LELVVNYDVP NHYEDYVHRV
701: GRTGRAGRKG SAVTFISEEE ERYAPDLVKA LELSEQTVPD DLKALADRFM AKVKQGTERT HGTGYGGSGF KFNEEEDEAR KFTKKAQAME YGYEEEKSDS
801: DFDEEEVHKA GDDLDVQAVG EPSTNDEARL HALEALARIQ RHAVPDHYEA ELEINDFPQH ARWRITHKDT LGPIQEGGVA ITIRGTYIAQ GKIVGANERK
901: LYLFIEGHSE SCVKKAKAEL KRVLEDCVNQ VNFSCWCMGI RGKKLTMVCM PTMVSMACYF QYSDCPRLWR CATLFPNRVI IRQLMFT
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.