CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0602400-01	Rice	nucleus, plasma membrane	69.31	81.2
Zm00001d036897_P001	Maize	extracellular	85.01	78.5
HORVU7Hr1G084210.1	Barley	cytosol	73.37	68.2
TraesCS7A01G374000.1	Wheat	nucleus	75.31	60.4
KXG37329	Sorghum	cytosol, plastid	56.08	50.08
KXG34634	Sorghum	plastid	56.44	49.54
KXG28851	Sorghum	cytosol, plastid	54.5	49.44
KRH20283	Soybean	plastid	50.79	49.15
VIT_11s0016g05090.t01	Wine grape	cytosol	53.09	49.1
KRH03709	Soybean	plastid	51.32	47.7
GSMUA_Achr5P06030_001	Banana	nucleus	50.79	40.06
KXG31614	Sorghum	cytosol	33.69	38.82
EER96257	Sorghum	cytosol	31.04	34.38
EES04084	Sorghum	cytosol	34.57	33.91
OQU86230	Sorghum	cytosol	35.8	28.39
EER92293	Sorghum	cytosol	30.34	27.83
OQU83862	Sorghum	nucleus	30.69	27.1
KXG32714	Sorghum	nucleus	35.8	25.66
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	31.39	23.24
KXG37746	Sorghum	nucleus	31.75	22.28
OQU79814	Sorghum	nucleus	30.16	17.33
EES14596	Sorghum	nucleus	31.04	16.57
OQU84042	Sorghum	cytosol	37.21	15.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:8082254	UniProt:A0A1W0VTU5	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EnsemblPlants:OQU76674	ProteinID:OQU76674	ProteinID:OQU76674.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF556
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3010G183800	SUPFAM:SSF52540
UniParc:UPI0001A893EC	RefSeq:XP_002437244.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:52329644..52334865

Molecular Weight (calculated)

60678.8 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.350

Length

567 amino acids

Sequence
(BLAST)

001: MASYGSSGGG GDRVPGVGVL AEAVDGLEIG GDGERRLDKY DIPVEVSGEG APAPADGFEA AGLAEAVLRN VARCGYDNPT PVQRYAMPIV MAGRDLMACA
101: QTGSGKTAAF CLPVVSGLVV PPAGGGSGYG YGRRDRGSFD RVAKPRALVL APTRELAAQI NEEARKFSFQ TGLRVVVAYG GTPMYNQLRD LERGVDLLVA
201: TPGRLVDMVE RSRISLEGIK YLVMDEADRM LDMGFEPQIR KIVDMMNMPK KSVRQTMLFS ATFPPEIQRL ASDFLYNYIF VTVGRVGSST DLIEQKLEFV
301: NDGEKRGFLI DLLQKQSAGV ANSKLQQPLT LVFVETKREA DSLRYFLQSK GFPATAIHGD RTQQERESAL KSFKSGTTPI MVATDVASRG LDVPNVAHVI
401: NYDLPKSIED YVHRIGRTGR AGKAGIATAF FTESNHPLAK GLLELMTEAK RDVPEWLVEY ANRPCYGGSS YGGRGRRGGG GFGGRDYRRS SDYGYGVDDS
501: GYSSRGGSYS GGGGYSSRGG SYSAGGSRGG RANYSGGGAS YGSSAPPPRY YPSYPMGTTD ISASGWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.