CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU1Hr1G083090.1	Barley	cytosol	26.17	66.93
TraesCS1B01G445500.1	Wheat	cytosol	47.2	66.3
CDX84672	Canola	cytosol	45.17	64.88
HORVU3Hr1G031710.1	Barley	mitochondrion	25.86	63.6
GSMUA_Achr3P01410_001	Banana	nucleus	49.69	60.53
HORVU1Hr1G091050.3	Barley	nucleus	56.23	60.37
TraesCS1A01G415500.1	Wheat	cytosol	58.88	58.7
CDY53786	Canola	nucleus	53.43	58.14
PGSC0003DMT400043101	Potato	nucleus	64.02	58.13
Solyc02g081290.2.1	Tomato	nucleus	59.03	58.04
VIT_09s0054g01810.t01	Wine grape	cytosol	63.86	57.83
KRH01937	Soybean	nucleus	63.24	57.51
KRH51212	Soybean	nucleus	62.77	57.49
VIT_03s0038g00010.t01	Wine grape	cytosol	63.71	57.44
PGSC0003DMT400024330	Potato	cytosol	59.5	57.1
Solyc02g068190.1.1	Tomato	cytosol, nucleus	58.41	56.65
Bra021872.1-P	Field mustard	nucleus	58.1	56.6
CDX79541	Canola	nucleus	55.45	56.6
CDY37696	Canola	nucleus	51.25	55.76
KXG37746	Sorghum	nucleus	68.69	54.58
AT2G33730.1	Thale cress	nucleus	62.31	54.57
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	30.53	51.58
KXG31614	Sorghum	cytosol	26.01	33.94
OQU76674	Sorghum	cytosol	27.1	30.69
EER96257	Sorghum	cytosol	24.14	30.27
EES04084	Sorghum	cytosol	26.64	29.58
KXG37329	Sorghum	cytosol, plastid	28.19	28.5
KXG28851	Sorghum	cytosol, plastid	27.73	28.48
KXG34634	Sorghum	plastid	28.35	28.17
EER92293	Sorghum	cytosol	25.39	26.38
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	27.73	23.24
OQU86230	Sorghum	cytosol	25.39	22.8
KXG32714	Sorghum	nucleus	26.48	21.49
OQU79814	Sorghum	nucleus	28.66	18.64
EES14596	Sorghum	nucleus	28.04	16.95
OQU84042	Sorghum	cytosol	25.7	11.89

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	UniProt:A0A1Z5RJD4	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:OQU83862
ProteinID:OQU83862	ProteinID:OQU83862.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3005G191200	SUPFAM:SSF52540	UniParc:UPI000B8BA158
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:67494021..67496404

Molecular Weight (calculated)

72518.5 Da

IEP (calculated)

9.647

GRAVY (calculated)

-0.656

Length

642 amino acids

Sequence
(BLAST)

001: MWIKAADRDG RRDRDRDRYI SRHRDREGHL RSSRQDQDGD RKRGRDRGTG RGHDGGERDD RLETMAMAAR EWEKELDAIA IKEQHLGSKK PRKRSIPKPS
101: EKFRFSFDWD NTDDTSRNDA VQKQPHEAAP PPPLLLFGRG FLAGIDRRDQ KKKAAAALKL NRPRRNGAVD EDYRDAADGD LYEASDMHVD RHWSDKALEE
201: MTERDWRIFR EDFSISYQGS GVPKPMRHWS KSKLGAKLLR AVDEAGYRKP SPIQMAAIPL GLQQRDAIAV AETGSGKTAA FALPLLSYVA GLPPITDENR
301: HDGPYALVMV PTRELSEQIA EETARLARYL GVRVVPVFGG GSEKTIAEQS ERIQKGCEVV VATPGRLLDL LERRYVVLNQ CNYVVLDEAD RMIDMGFEPQ
401: VASVLAVMPS SNLKPQNEDE ELDEKKVYRT TFMFSATMPP AVERLARTYL RNPVVVTIGT PGKATELITQ NVMMLKESEK MPQLHRLLRD LRDKTVIVFC
501: NTKKTTDWCF NELKNAGFGV TALHGNLTQA ERKASLDGFR NRQFNVLVAS EVAARGINIP DVAHVINYDM PSSINKYIHC IGRTGRAGKK GVATSFLTLE
601: NTDIFFDLKQ MLIQSNSHVP PELAKHKASQ FKPGSIPERH VR

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.