CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042416_P002	Maize	extracellular, plasma membrane	97.23	88.09
HORVU3Hr1G092600.1	Barley	cytosol	85.12	85.71
HORVU3Hr1G092610.1	Barley	cytosol	85.12	85.71
TraesCS3A01G416900.1	Wheat	cytosol	84.78	85.37
TraesCS3D01G412400.2	Wheat	cytosol	84.78	85.22
TraesCS3B01G451900.1	Wheat	cytosol	84.43	85.02
GSMUA_Achr8P01340_001	Banana	cytosol	54.33	81.98
KXG31614	Sorghum	cytosol	59.69	70.12
KRH03228	Soybean	nucleus	70.59	67.77
KRH57127	Soybean	endoplasmic reticulum, nucleus	71.63	67.65
AT5G63120.2	Thale cress	cytosol	68.86	67.34
Bra035857.1-P	Field mustard	cytosol	68.51	67.01
CDY16735	Canola	cytosol	68.51	67.01
CDY48128	Canola	cytosol	68.34	66.5
Solyc03g112350.2.1	Tomato	nucleus	71.97	63.9
VIT_17s0000g09130.t01	Wine grape	cytosol	60.38	57.12
PGSC0003DMT400046821	Potato	cytosol	69.9	56.27
EER96257	Sorghum	cytosol	34.26	38.67
OQU76674	Sorghum	cytosol	33.91	34.57
OQU86230	Sorghum	cytosol	42.04	33.99
KXG37329	Sorghum	cytosol, plastid	34.26	31.18
KXG34634	Sorghum	plastid	34.6	30.96
KXG32714	Sorghum	nucleus	41.7	30.47
KXG28851	Sorghum	cytosol, plastid	32.87	30.4
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	38.58	29.11
EER92293	Sorghum	cytosol	29.41	27.51
OQU83862	Sorghum	nucleus	29.58	26.64
KXG37746	Sorghum	nucleus	30.8	22.03
OQU79814	Sorghum	nucleus	36.85	21.58
EES14596	Sorghum	nucleus	37.54	20.43
OQU84042	Sorghum	cytosol	44.81	18.66

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EntrezGene:8056154	UniProt:C5XFL3	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlants:EES04084
ProteinID:EES04084	ProteinID:EES04084.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003729	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
EnsemblPlantsGene:SORBI_3003G397800	SUPFAM:SSF52540	UniParc:UPI0001A85535	RefSeq:XP_002458964.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:-:70726535..70731511

Molecular Weight (calculated)

62781.9 Da

IEP (calculated)

9.875

GRAVY (calculated)

-0.428

Length

578 amino acids

Sequence
(BLAST)

001: MNPYDLRFAD PSSYHDRRSD LAVAPTFAPP APVAAVNPNP YAAAYPPVPV PVPAAPAGGD YQRYGQGGRG RGGGGRGGGG GYGGGGGGYG GGGRGGGRGR
101: DGLDSLALPK PDFRSLIPFE KNFYVECPSV QAMSEADVAQ YRRLRDITVE GRDVPKPVRY FQEANFPDYC MQAIAKSGFV EPTPIQSQGW PMALKGRDLI
201: GIAQTGSGKT LSYLLPGLVH VGAQPRLEQG DGPIVLILAP TRELAVQIQE ESTKFGSYSR TRSTCVYGGA PKGPQIRDLR RGVEIVIATP GRLIDMLEAG
301: HTNLRRVTYL VLDEADRMLD MGFEPQIRKI VAQIRPDRQT LYWSATWPRE VEALARQFLQ NPYKVTIGSP ELKANHSIQQ IVEVISDHEK YPRLSKLLSD
401: LMDGSRILIF FQTKKDCDKI TRQLRMDGWP ALSIHGDKAQ AERDYVLAEF KSGKSPIMAA TDVAARGLDV KDIKCVINYD FPTTLEDYIH RIGRTGRAGA
501: SGTAFTFFTH ANAKFSRNLV KILREAGQAV NPALESMSKS SNSGGGGNFR SRGRGGFGNR GHMSGSNTFP LGGGRRPY

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.