Factsheet for Zm00001d042416_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

extracellular: 20408568
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04084	Sorghum	cytosol	88.09	97.23
HORVU3Hr1G092600.1	Barley	cytosol	76.18	84.67
HORVU3Hr1G092610.1	Barley	cytosol	76.18	84.67
TraesCS3A01G416900.1	Wheat	cytosol	75.86	84.32
TraesCS3D01G412400.2	Wheat	cytosol	75.86	84.17
TraesCS3B01G451900.1	Wheat	cytosol	75.55	83.97
GSMUA_Achr8P01340_001	Banana	cytosol	49.22	81.98
KRH57127	Soybean	endoplasmic reticulum, nucleus	64.73	67.48
KRH03228	Soybean	nucleus	63.64	67.44
AT5G63120.2	Thale cress	cytosol	62.07	67.01
CDY16735	Canola	cytosol	61.6	66.5
Bra035857.1-P	Field mustard	cytosol	61.6	66.5
CDY48128	Canola	cytosol	61.44	65.99
Solyc03g112350.2.1	Tomato	nucleus	65.05	63.75
Zm00001d039452_P002	Maize	cytosol	53.13	61.3
VIT_17s0000g09130.t01	Wine grape	cytosol	54.08	56.46
PGSC0003DMT400046821	Potato	cytosol	63.17	56.13
Zm00001d019449_P004	Maize	nucleus	30.41	38.19
Zm00001d008725_P003	Maize	cytosol	38.56	35.5
Zm00001d039673_P002	Maize	cytosol	38.87	35.38
Zm00001d048924_P001	Maize	plasma membrane	29.62	31.09
Zm00001d011155_P012	Maize	nucleus	37.77	30.78
Zm00001d036897_P001	Maize	extracellular	29.31	30.46
Zm00001d007755_P001	Maize	plastid	30.88	30.45
Zm00001d044510_P002	Maize	mitochondrion	38.09	30.3
Zm00001d007757_P004	Maize	plastid	30.88	29.76
Zm00001d047633_P002	Maize	nucleus	34.01	28.26
Zm00001d028898_P011	Maize	cytosol	33.54	27.79
Zm00001d047502_P001	Maize	extracellular	26.33	27.18
Zm00001d033704_P007	Maize	extracellular	27.74	23.98
Zm00001d013453_P001	Maize	nucleus	27.43	23.84
Zm00001d024533_P001	Maize	nucleus	33.07	19.81
Zm00001d048632_P001	Maize	cytosol	40.13	18.52
Zm00001d007719_P010	Maize	cytosol	39.03	18.4

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	UniProt:A0A1D6N3L6	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	ProteinID:ONM35284.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0008441E71	EnsemblPlantsGene:Zm00001d042416
EnsemblPlants:Zm00001d042416_P002	EnsemblPlants:Zm00001d042416_T002	SEG:seg	:	:	:

Description

DEAD box RNA helicase1 DEAD box RNA helicase1

Coordinates

chr3:-:166411975..166416353

Molecular Weight (calculated)

69816.7 Da

IEP (calculated)

10.174

GRAVY (calculated)

-0.397

Length

638 amino acids

Sequence
(BLAST)

001: MHVGHANRPC PFPHATSKSH TQQKVNHRVS ARRRPQIHPL PASLAFPLEH VSALALLCRP AKLLTGAMNP YDLRFADPSS YHDRRSDLTV APTFAPPAPV
101: AAANLNPYAA AYPLPVPVPV PAAPAGGDYQ RYGQGGRGRG GGGRGGGGGY GGGGRGGGRG RDGLDSLALP KPDFRSLIPF EKNFYVECPS VQAMSEADVA
201: QYRRLRDITI EGRDVPKPVR YFQEANFPDY CMQAIAKSGF VEPTPIQSQG WPMALKGRDL IGIAQTGSGK TLSYLLPGLV HVGAQPRLEQ GDGPIVLILA
301: PTRELAVQIQ EESTKFGSYS RTRSTCVYGG APKGPQIRDL RRGVEIVIAT PGRLIDMLEA GHTNLRRVTY LVLDEADRML DMGFEPQIRK IVAQIRPDRQ
401: TLYWSATWPR EVEALARQFL QNPYKVIIGS PELKANHSIQ QIVEVISDHE KYPRLSKLLS DLMDGSRILI FFQTKKDCDK ITRQLRMDGW PALSIHGDKA
501: QAERDYVLAE FKSGKSPIMA ATDVAARGLD VKDIKCVINY DFPTTLEDYI HRIGRTGRAG ASGTAFTFFT HANAKFSRNL VKILREAGQV VNPALESMSR
601: SSNSTGGGNF RSRGRGGFGN RGHMSGSNTF PLGGRRPY

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.